Jonathan El-Khoury

Dr. Jonathan El-Khoury

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 November 2023 in British Journal of Ophthalmology
Verified
Journal Article
Closed access
PDF file
FAFares Antaki
Fares Antaki
DMDaniel Milad
Daniel Milad
MCMark A Chia
Mark A Chia
CGCharles-Édouard Giguère
Charles-Édouard Giguère
STSamir Touma
Samir Touma
RDRenaud Duval
Renaud Duval
Background Evidence on the performance of Generative Pre-trained Transformer 4 (GPT-4), a large language model (LLM), in the ophthalmology question-answering domain is needed. Methods We tested GPT-4 on two 260-question multiple choice question sets from the Basic and Clinical Science Course (BCSC) Self-Assessment Program and the OphthoQuestions question banks. We compared the accuracy of GPT-4 models with varying temperatures (creativity setting) and evaluated their responses in a subset of questions. We also compared the best-performing GPT-4 model to GPT-3.5 and to historical human performance. Results GPT-4–0.3 (GPT-4 with a temperature of 0.3) achieved the highest accuracy among GPT-4 models, with 75.8% on the BCSC set and 70.0% on the OphthoQuestions set. The combined accuracy was 72.9%, which represents an 18.3% raw improvement in accuracy compared with GPT-3.5 (p<0.001). Human graders preferred responses from models with a temperature higher than 0 (more creative). Exam section, question difficulty and cognitive level were all predictive of GPT-4-0.3 answer accuracy. GPT-4-0.3’s performance was numerically superior to human performance on the BCSC (75.8% vs 73.3%) and OphthoQuestions (70.0% vs 63.0%), but the difference was not statistically significant (p=0.55 and p=0.09). Conclusion GPT-4, an LLM trained on non-ophthalmology-specific data, performs significantly better than its predecessor on simulated ophthalmology board-style exams. Remarkably, its performance tended to be superior to historical human performance, but that difference was not statistically significant in our study.

24 January 2023 in medRxiv
Verified
Preprint
Open access
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FAFares Antaki
Fares Antaki
STSamir Touma
Samir Touma
DMDaniel Milad
Daniel Milad
JEJonathan El-Khoury
Jonathan El-Khoury
RDRenaud Duval
Renaud Duval
We tested the accuracy of ChatGPT, a large language model (LLM), in the ophthalmology question-answering space using two popular multiple choice question banks used for the high-stakes Ophthalmic Knowledge Assessment Program (OKAP) exam. The testing sets were of easy-to-moderate difficulty and were diversified, including recall, interpretation, practical and clinical decision-making problems. ChatGPT achieved 55.8% and 42.7% accuracy in the two 260-question simulated exams. Its performance varied across subspecialties, with the best results in general medicine and the worst in neuro-ophthalmology and ophthalmic pathology and intraocular tumors. These results are encouraging but suggest that specialising LLMs through domain-specific pre-training may be necessary to improve their performance in ophthalmic subspecialties.

Verified
Journal Article
Open access
PDF file
DMDavid Mikhail
David Mikhail
DMDaniel Milad
Daniel Milad
FAFares Antaki
Fares Antaki
JMJason Milad
Jason Milad
AFAndrew Farah
Andrew Farah
RDRenaud Duval
Renaud Duval
Objectives: The integration of multimodal capabilities into GPT-4 represents a transformative leap for artificial intelligence in ophthalmology, yet its utility in scenarios requiring advanced reasoning remains underexplored. This study evaluates GPT-4’s multimodal performance on open-ended diagnostic and next-step reasoning tasks in complex ophthalmology cases, comparing it against human expertise. Methods: GPT-4 was assessed across three study arms: (1) text-based case details with figure descriptions, (2) cases with text and accompanying ophthalmic figures, and (3) cases with figures only (no figure descriptions). We compared GPT-4’s diagnostic and next-step accuracy across arms and benchmarked its performance against three board-certified ophthalmologists. Results: GPT-4 achieved 38.4% (95% CI [33.9%, 43.1%]) diagnostic accuracy and 57.8% (95% CI [52.8%, 62.2%]) next-step accuracy when prompted with figures without descriptions. Diagnostic accuracy declined significantly compared to text-only prompts (p = 0.007), though the next-step performance was similar (p = 0.140). Adding figure descriptions restored diagnostic accuracy (49.3%) to near parity with text-only prompts (p = 0.684). Using figures without descriptions, GPT-4’s diagnostic accuracy was comparable to two ophthalmologists (p = 0.30, p = 0.41) but fell short of the highest-performing ophthalmologist (p = 0.0004). For next-step accuracy, GPT-4 was similar to one ophthalmologist (p = 0.22) but underperformed relative to the other two (p = 0.0015, p = 0.0017). Conclusions: GPT-4’s diagnostic performance diminishes when relying solely on ophthalmic images without textual context, highlighting limitations in its current multimodal capabilities. Despite this, GPT-4 demonstrated comparable performance to at least one ophthalmologist on both diagnostic and next-step reasoning tasks, emphasizing its potential as an assistive tool. Future research should refine multimodal prompts and explore iterative or sequential prompting strategies to optimize AI-driven interpretation of complex ophthalmic datasets.

30 January 2025 in Ophthalmology Science
Verified
Journal Article
Open access
DMDaniel Milad
Daniel Milad
FAFares Antaki
Fares Antaki
DMDavid Mikhail
David Mikhail
AFAndrew Farah
Andrew Farah
JEJonathan El-Khoury
Jonathan El-Khoury
RDRenaud Duval
Renaud Duval
Code-free deep learning (CFDL) allows clinicians with no coding experience to build their own artificial intelligence models. This study assesses the performance of CFDL in glaucoma detection from fundus images in comparison to expert-designed models. Deep learning model development, testing, and validation. A total of 101 442 labeled fundus images from the Rotterdam EyePACS Artificial Intelligence for Robust Glaucoma Screening (AIROGS) dataset were included. Ophthalmology trainees without coding experience designed a CFDL binary model using the Rotterdam EyePACS AIROGS dataset of fundus images (101 442 labeled images) to differentiate glaucoma from normal optic nerves. We compared our results with bespoke models from the literature. We then proceeded to externally validate our model using 2 datasets, the Retinal Fundus Glaucoma Challenge (REFUGE) and the Glaucoma grading from Multi-Modality imAges (GAMMA) at 0.1, 0.3, and 0.5 confidence thresholds. Area under the precision-recall curve (AuPRC), sensitivity at 95% specificity (SE@95SP), accuracy, area under the receiver operating curve (AUC), and positive predictive value (PPV). The CFDL model showed high performance metrics that were comparable to the bespoke deep learning models. Our single-label classification model had an AuPRC of 0.988, an SE@95SP of 95%, and an accuracy of 91% (compared with 85% SE@95SP for the top bespoke models). Using the REFUGE dataset for external validation, our model had an SE@95SP, AUC, PPV, and accuracy of 83%, 0.960%, 73% to 94%, and 95% to 98%, respectively, at the 0.1, 0.3, and 0.5 confidence threshold cutoffs. Using the GAMMA dataset for external validation at the same confidence threshold cutoffs, our model had an SE@95SP, AUC, PPV, and accuracy of 98%, 0.994%, 94% to 96%, and 94% to 97%, respectively. The capacity of CFDL models to perform glaucoma screening using fundus images presents a compelling proof of concept, empowering clinicians to explore innovative model designs for broad glaucoma screening in the near future. Proprietary or commercial disclosure may be found in the Footnotes and Disclosures at the end of this article.

1 November 2020 in Physiotherapy Canada
Verified
Journal Article
Open access
JEJonathan El-Khoury
Jonathan El-Khoury
TOTatiana Orozco
Tatiana Orozco
SBSasha Bernatsky
Sasha Bernatsky
FDFrançois Desmeules
François Desmeules
KPKadija Perreault
Kadija Perreault
DFDebbie Ehrmann Feldman
Debbie Ehrmann Feldman
Purpose: The aim of this study was to document the types of treatment that Quebec physiotherapists use for knee osteoarthritis (OA), to assess whether treatment choices are consistent with current practice guidelines, and to explore the factors associated with using certain treatments. Method:Physiotherapists in Quebec answered a cross-sectional survey that was sent through licensing bodies and social media contacts. The respondents were asked which treatments they would use for a typical case of knee OA. We used descriptive statistics to determine the proportions of physiotherapists who chose each treatment and explored the associations between the use of treatments and demographic factors. Results: A total of 195 Quebec physiotherapists participated in this study, 74.9% of whom were women. The most common treatment choices were mobility exercises (96.4%), followed by education (93.8%), strengthening exercises (85.1%), thermotherapy and cryotherapy (72.3%), manual therapy (53.3%), and electrotherapy (42.1%). Selecting either manual or electrotherapy was significantly associated with working in private practice. Conclusions: The great majority of physiotherapists included mobility and strengthening exercises, both of which are the recommended approaches for treating knee OA. Physiotherapists in private practice were more likely to select manual therapy and electrotherapy.

3 March 2021 in British Journal of Ophthalmology
Verified
Journal Article
Closed access
PDF file
JEJonathan El-Khoury
Jonathan El-Khoury
MMMajd Mustafa
Majd Mustafa
RDRoy Daoud
Roy Daoud
MHMona Harissi-Dagher
Mona Harissi-Dagher
Background/aims To evaluate the time needed for patients with Boston type 1 keratoprosthesis (KPro) to reach their best-corrected visual acuity (BCVA) and all contributing factors. Methods We retrospectively reviewed 137 consecutive eyes from 118 patients, measured how long they needed to reach their BCVA and looked at factors that might affect this time duration including patient demographics, ocular comorbidities and postoperative complications. Results The mean follow-up was 5.49 years. The median time to BCVA postoperatively was 6 months, with 47% of patients achieving their BCVA by 3 months. The mean best achieved logMAR visual acuity was 0.71, representing a gain of 6 lines on the Snellen visual acuity chart. Postoperative glaucoma, retroprosthetic membrane (RPM) and endophthalmitis prolonged this duration. We found no correlation between the following factors and time to BCVA: gender, age, indication for KPro surgery, primary versus secondary KPro, number of previous penetrating keratoplasties, previous retinal surgery, intraoperative anterior vitrectomy and preoperative glaucoma. Conclusion In our retrospective cohort, the majority of subjects reached their BCVA between 3 and 6 months after KPro implantation. This duration was significantly prolonged by the development of postoperative glaucoma, RPM and endophthalmitis.