Cancer stem cells (CSCs) are a small but highly plastic subpopulation of tumor cells that play essential roles in tumor initiation, heterogeneity, metastasis, therapeutic resistance, and recurrence. Long non-coding RNAs (lncRNAs) have emerged as critical regulators of CSC biology through diverse molecular mechanisms. They can modulate chromatin architecture, epigenetic modifications, transcriptional activity, RNA stability, alternative splicing, protein function, signaling pathway activation, intercellular communication, and even micropeptide production. Through these regulatory modes, lncRNAs influence key CSC properties, including self-renewal, proliferation, survival, differentiation, metabolic plasticity, epithelial–mesenchymal transition, immune evasion, and drug resistance. Increasing evidence indicates that lncRNAs regulate major stemness-associated pathways, such as Wnt/β-catenin, Notch, Hedgehog, Hippo/YAP, TGF-β, and PI3K/AKT signaling, thereby sustaining CSC phenotypes and promoting tumor progression. In addition, CSC-associated lncRNAs may serve as promising biomarkers for diagnosis, prognosis prediction, recurrence monitoring, and therapeutic response evaluation. Therapeutic strategies targeting lncRNAs, including antisense oligonucleotides, small interfering RNAs, CRISPR/Cas-based approaches, and nanoparticle-mediated delivery systems, offer potential opportunities to eliminate CSCs and overcome treatment resistance. However, the clinical translation of lncRNA-targeted therapies remains limited by tumor heterogeneity, context-dependent lncRNA functions, delivery efficiency, off-target effects, and safety concerns. In this review, we summarize the molecular mechanisms of lncRNA action, discuss the functional roles of lncRNAs in CSC regulation, and highlight their clinical implications as biomarkers and therapeutic targets. A deeper understanding of lncRNA-mediated CSC regulation may provide new insights into cancer progression and support the development of more precise strategies to prevent tumor relapse and improve therapeutic outcomes .