Marcin Kalek

Prof. Marcin Kalek

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Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 September 2008 in Organic Letters
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Journal Article
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MKMarcin Kalek
Marcin Kalek
AZAsraa Ziadi
Asraa Ziadi
JSJacek Stawiński
Jacek Stawiński

17 December 2009 in Advanced Synthesis & Catalysis
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Journal Article
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MKMarcin Kalek
Marcin Kalek
MJMartina Jezowska
Martina Jezowska
JSJacek Stawiński
Jacek Stawiński

27 March 2015 in Journal of the American Chemical Society
Verified
Journal Article
Open access
SLSarah Yunmi Lee
Sarah Yunmi Lee
YFYuji Fujiwara
Yuji Fujiwara
ANAtsuko Nishiguchi
Atsuko Nishiguchi
MKMarcin Kalek
Marcin Kalek
GFGregory C. Fu
Gregory C. Fu
Substantial progress has been described in the development of asymmetric variants of the phosphine-catalyzed intermolecular [3+2] annulation of allenes with alkenes; however, there have not been corresponding advances for the intramolecular process, which can generate a higher level of complexity (an additional ring and stereocenter(s)). In this study, we describe the application of chiral phosphepine catalysts to address this challenge, thereby providing access to useful scaffolds that are found in bioactive compounds, including diquinane and quinolin-2-one derivatives, with very good stereoselectivity. The products of the [3+2] annulation can be readily transformed into structures that are even more stereochemically rich. Mechanistic studies are consistent with β addition of the phosphepine to the allene being the turnover-limiting step of the catalytic cycle, followed by a concerted [3+2] cycloaddition to the pendant olefin.

1 February 2008 in Molecular Cell
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Journal Article
Closed access
MDMandar V. Deshmukh
Mandar V. Deshmukh
BJBrittnee N. Jones
Brittnee N. Jones
DQDuc-Uy Quang-Dang
Duc-Uy Quang-Dang
JFJeremy Flinders
Jeremy Flinders
SFStephen N. Floor
Stephen N. Floor
JGJohn D. Gross
John D. Gross


15 April 2016 in Accounts of Chemical Research
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Journal Article
Open access
SSStefano Santoro
Stefano Santoro
MKMarcin Kalek
Marcin Kalek
GHGenping Huang
Genping Huang
FHFahmi Himo
Fahmi Himo
Quantum chemical techniques today are indispensable for the detailed mechanistic understanding of catalytic reactions. The development of modern density functional theory approaches combined with the enormous growth in computer power have made it possible to treat quite large systems at a reasonable level of accuracy. Accordingly, quantum chemistry has been applied extensively to a wide variety of catalytic systems. A huge number of problems have been solved successfully, and vast amounts of chemical insights have been gained. In this Account, we summarize some of our recent work in this field. A number of examples concerned with transition metal-catalyzed reactions are selected, with emphasis on reactions with various kinds of selectivities. The discussed cases are (1) copper-catalyzed C–H bond amidation of indoles, (2) iridium-catalyzed C(sp3)–H borylation of chlorosilanes, (3) vanadium-catalyzed Meyer–Schuster rearrangement and its combination with aldol- and Mannich-type additions, (4) palladium-catalyzed propargylic substitution with phosphorus nucleophiles, (5) rhodium-catalyzed 1:2 coupling of aldehydes and allenes, and finally (6) copper-catalyzed coupling of nitrones and alkynes to produce β-lactams (Kinugasa reaction). First, the methodology adopted in these studies is presented briefly. The electronic structure method in the great majority of these kinds of mechanistic investigations has for the last two decades been based on density functional theory. In the cases discussed here, mainly the B3LYP functional has been employed in conjunction with Grimme’s empirical dispersion correction, which has been shown to improve the calculated energies significantly. The effect of the surrounding solvent is described by implicit solvation techniques, and the thermochemical corrections are included using the rigid-rotor harmonic oscillator approximation. The reviewed examples are chosen to illustrate the usefulness and versatility of the adopted methodology in solving complex problems and proposing new detailed reaction mechanisms that rationalize the experimental findings. For each of the considered reactions, a consistent mechanism is presented, the experimentally observed selectivities are reproduced, and their sources are identified. Reproducing selectivities requires high accuracy in computing relative transition state energies. As demonstrated by the results summarized in this Account, this accuracy is possible with the use of the presented methodology, benefiting of course from a large extent of cancellation of systematic errors. It is argued that as the employed models become larger, the number of rotamers and isomers that have to be considered for every stationary point increases and a careful assessment of their energies is therefore necessary in order to ensure that the lowest energy conformation is located. This issue constitutes a bottleneck of the investigation in some cases and is particularly important when analyzing selectivities, since small energy differences need to be reproduced.