Petr Vodrážka

Mr. Petr Vodrážka

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 April 2022 in Journal of Experimental Biology
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Journal Article
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LKLukáš Kučera
Lukáš Kučera
MMMartin Moos
Martin Moos
TŠTomáš Štětina
Tomáš Štětina
JKJaroslava Korbelová
Jaroslava Korbelová
PVPetr Vodrážka
Petr Vodrážka
VKVladimír Košťál
Vladimír Košťál
Insects that naturally tolerate internal freezing produce complex mixtures of multiple cryoprotectants (CPs). Better knowledge on composition of these mixtures, and on the mechanisms of individual CP interactions, could inspire development of laboratory CP formulations optimized for cryopreservation of cells and other biological material. Here, we identify and quantify (using high resolution mass spectrometry) a range of putative CPs in larval tissues of a subarctic fly, Chymomyza costata, which survives long-term cryopreservation in liquid nitrogen. The CPs proline, trehalose, glutamine, asparagine, glycine betaine, glycerophosphoethanolamine, glycerophosphocholine and sarcosine accumulate in hemolymph in a ratio of 313:108:55:26:6:4:2.9:0.5 mmol l−1. Using calorimetry, we show that artificial mixtures, mimicking the concentrations of major CPs in hemolymph of freeze-tolerant larvae, suppress the melting point of water and significantly reduce the ice fraction. We demonstrate in a bioassay that mixtures of CPs administered through the diet act synergistically rather than additively to enable cryopreservation of otherwise freeze-sensitive larvae. Using matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI), we show that during slow extracellular freezing trehalose becomes concentrated in partially dehydrated hemolymph where it stimulates transition to the amorphous glass phase. In contrast, proline moves to the boundary between extracellular ice and dehydrated hemolymph and tissues where it probably forms a layer of dense viscoelastic liquid. We propose that amorphous glass and viscoelastic liquids may protect macromolecules and cells from thermomechanical shocks associated with freezing and transfer into and out of liquid nitrogen.

14 February 2021 in Amino Acids
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Journal Article
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SOStanislav Opekar
Stanislav Opekar
HZHelena Zahradníčková
Helena Zahradníčková
PVPetr Vodrážka
Petr Vodrážka
LŘLucie Řimnáčová
Lucie Řimnáčová
PŠPetr Šimek
Petr Šimek
MMMartin Moos
Martin Moos

1 October 2021 in Journal of Chromatography A
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Journal Article
Closed access
LŘLucie Řimnáčová
Lucie Řimnáčová
MMMartin Moos
Martin Moos
SOStanislav Opekar
Stanislav Opekar
PVPetr Vodrážka
Petr Vodrážka
VPVladimír Pejchal
Vladimír Pejchal
PŠPetr Šimek
Petr Šimek

25 January 2024 in Journal of Chemical Ecology
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Journal Article
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Freerk MollemanFreerk Molleman
Freerk Molleman
MMManidip Mandal
Manidip Mandal
ASAnna Sokół-Łętowska
Anna Sokół-Łętowska
UWUrszula Walczak
Urszula Walczak
MVMartin Volf
Martin Volf
PMPriscila Mezzomo
Priscila Mezzomo

7 February 2025 in Metabolites
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Journal Article
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PVPetr Vodrážka
Petr Vodrážka
LŘLucie Řimnáčová
Lucie Řimnáčová
PBPetra Berková
Petra Berková
JVJan Vojtíšek
Jan Vojtíšek
MVMiroslav Verner
Miroslav Verner
PŠPetr Šimek
Petr Šimek
Background: Fatty acids (FAs) represent a ubiquitous class of nonpolar alkyl carboxylate metabolites with diverse biological functions. Nutrition, metabolism, and endogenous and exogenous stress influence the overall FA metabolic status and transport via the bloodstream. FAs esterified in lipids are of particular interest, as they represent promising biomarkers of pathological diseases and nutritional status. Methods: Here, we report a validated gas chromatographic-mass spectrometric (GC-MS) method for the quantitative analysis of 32 FAs exclusively bound in esterified lipids. The developed sample preparation protocol comprises three steps using only 5 µL of human serum for Folch extraction, sodium methoxide-catalyzed transesterification in tert-butyl methyl ether, and re-extraction in isooctane prior to a quantitative GC-MS analysis with positive ion chemical ionization (PICI) and selected ion monitoring (SIM). Results: The base-catalyzed transmethylation step was studied for 14 lipid classes and was found to be efficient under mild conditions for all major esterified lipids but not for free FAs, lipid amides, or sphingolipids. To minimize matrix effects and instrument bias, internal fatty acid trideuteromethyl esters (D3-FAME) standards were prepared through isotope-coded derivatization with D3-labeled methylchloroformate/methanol medium mixed with each transmethylated serum extract for the assay. The method was validated according to FDA guidelines and evaluated by analyzing NIST SRM 2378 Serum 1 and sera from three healthy donors. Conclusions: The measured quantitative FA values are consistent with the reference data of SRM 2378, and they demonstrate the application potential of the described method for general FA analysis in esterified lipids as a novel complementary tool for lipidomics, as well as for the analysis of membrane FAs in dry blood spots and red blood cells.

13 February 2025 in Oecologia
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Journal Article
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PMPriscila Mezzomo
Priscila Mezzomo
JLJing V. Leong
Jing V. Leong
VPVaclav Pokorny
Vaclav Pokorny
LJLeonardo Ré Jorge
Leonardo Ré Jorge
TVTereza Volfova
Tereza Volfova
MVMartin Volf
Martin Volf