JR Caldera

Dr. JR Caldera

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2020 in Cell
Verified
Journal Article
Closed access
CHConnie W.Y. Ha
Connie W.Y. Ha
AMAnthony Martin
Anthony Martin
GSGregory D. Sepich-Poore
Gregory D. Sepich-Poore
BSBaochen Shi
Baochen Shi
YWYizhou Wang
Yizhou Wang
SDSuzanne Devkota
Suzanne Devkota

3 September 2020 in Cell
Verified
Journal Article
Closed access
JWJacob M. Wozniak
Jacob M. Wozniak
RMRobert H. Mills
Robert H. Mills
JOJoshua Olson
Joshua Olson
JCJR Caldera
JR Caldera
GSGregory D. Sepich-Poore
Gregory D. Sepich-Poore
DGDavid J. Gonzalez
David J. Gonzalez

5 December 2023 in Nature Communications
Verified
Journal Article
Open access
PDF file
IHIrshad A. Hajam
Irshad A. Hajam
MKMadhusudhanarao Katiki
Madhusudhanarao Katiki
RMRandall McNally
Randall McNally
MLMaria Lazaro-Diez
Maria Lazaro-Diez
SKStacey Kolar
Stacey Kolar
George Y. LiuGeorge Y. Liu
George Y. Liu
Acne is a dermatologic disease with a strong pathologic association with human commensal Cutibacterium acnes. Conspicuously, certain C. acnes phylotypes are associated with acne, whereas others are associated with healthy skin. Here we investigate if the evolution of a C. acnes enzyme contributes to health or acne. Two hyaluronidase variants exclusively expressed by C. acnes strains, HylA and HylB, demonstrate remarkable clinical correlation with acne or health. We show that HylA is strongly pro-inflammatory, and HylB is modestly anti-inflammatory in a murine (female) acne model. Structural and phylogenic studies suggest that the enzymes evolved from a common hyaluronidase that acquired distinct enzymatic activity. Health-associated HylB degrades hyaluronic acid (HA) exclusively to HA disaccharides leading to reduced inflammation, whereas HylA generates large-sized HA fragments that drive robust TLR2-dependent pathology. Replacing an amino acid, Serine to Glycine near the HylA catalytic site enhances the enzymatic activity of HylA and produces an HA degradation pattern intermediate to HylA and HylB. Selective targeting of HylA using peptide vaccine or inhibitors alleviates acne pathology. We suggest that the functional divergence of HylA and HylB is a major driving force behind C. acnes health- and acne- phenotype and propose targeting of HylA as an approach for acne therapy.

30 January 2025 in Infection Control & Hospital Epidemiology
Verified
Journal Article
Open access
PDF file
IKIshminder Kaur
Ishminder Kaur
BSBennett Shaw
Bennett Shaw
AMAshrit Multani
Ashrit Multani
CPChristine Pham
Christine Pham
SMSanchi Malhotra
Sanchi Malhotra
SYShangxin Yang
Shangxin Yang
Objective: To describe the real-world clinical impact of a commercially available plasma cell-free DNA metagenomic next-generation sequencing assay, the Karius test (KT). Methods: We retrospectively evaluated the clinical impact of KT by clinical panel adjudication. Descriptive statistics were used to study associations of diagnostic indications, host characteristics, and KT-generated microbiologic patterns with the clinical impact of KT. Multivariable logistic regression modeling was used to further characterize predictors of higher positive clinical impact. Results: We evaluated 1000 unique clinical cases of KT from 941 patients between January 1, 2017–August 31, 2023. The cohort included adult (70%) and pediatric (30%) patients. The overall clinical impact of KT was positive in 16%, negative in 2%, and no clinical impact in 82% of the cases. Among adult patients, multivariable logistic regression modeling showed that culture-negative endocarditis (OR 2.3; 95% CI, 1.11–4.53; P .022) and concern for fastidious/zoonotic/vector-borne pathogens (OR 2.1; 95% CI, 1.11–3.76; P .019) were associated with positive clinical impact of KT. Host immunocompromised status was not reliably associated with a positive clinical impact of KT (OR 1.03; 95% CI, 0.83–1.29; P .7806). No significant predictors of KT clinical impact were found in pediatric patients. Microbiologic result pattern was also a significant predictor of impact. Conclusions: Our study highlights that despite the positive clinical impact of KT in select situations, most testing results had no clinical impact. We also confirm diagnostic indications where KT may have the highest yield, thereby generating tools for diagnostic stewardship.

17 February 2023 in Expert Review of Vaccines
Verified
Journal Article
Open access
CTChih-Ming Tsai
Chih-Ming Tsai
JCJR Caldera
JR Caldera
IHIrshad A. Hajam
Irshad A. Hajam
George Y. LiuGeorge Y. Liu
George Y. Liu
S. aureus is a leading cause of infection and a major driver of antibiotic resistance. Appropriately, it consistently ranks on the CDC list of “THREAT” pathogens that are in dire need of an effecti...

20 August 2020 in PLOS Pathogens
Verified
Journal Article
Open access
PDF file
MPMarissa J. Paterson
Marissa J. Paterson
JCJR Caldera
JR Caldera
CNChristopher Nguyen
Christopher Nguyen
PSPurnima Sharma
Purnima Sharma
ACAnthony M. Castro
Anthony M. Castro
DUDavid M. Underhill
David M. Underhill
Staphylococcus aureus (S. aureus) is one of the most common bacterial infections worldwide, and antibiotic resistant strains such as Methicillin-Resistant S. aureus (MRSA) are a major threat and burden to public health. MRSA not only infects immunocompromised patients but also healthy individuals and has rapidly spread from the healthcare setting to the outside community. However, all vaccines tested in clinical trials to date have failed. Immunocompromised individuals such as patients with HIV or decreased levels of CD4+ T cells are highly susceptible to S. aureus infections, and they are also at increased risk of developing fungal infections. We therefore wondered whether stimulation of antifungal immunity might promote the type of immune responses needed for effective host defense against S. aureus. Here we show that vaccination of mice with a fungal β-glucan particle (GP) loaded with S. aureus antigens provides protective immunity to S. aureus. We generated glucan particles loaded with the four S. aureus proteins ClfA, IsdA, MntC, and SdrE, creating the 4X-SA-GP vaccine. Vaccination of mice with three doses of 4X-SA-GP promoted protection in a systemic model of S. aureus infection with a significant reduction in the bacterial burden in the spleen and kidneys. 4X-SA-GP vaccination induced antigen-specific Th1 and Th17 CD4+ T cell and antibody responses and provided long-term protection. This work suggests that the GP vaccine system has potential as a novel approach to developing vaccines for S. aureus. Staphylococcus aureus (S. aureus) is a serious burden to public health as it is a leading cause of antibiotic-resistant infections worldwide. Vaccines aimed at targeting S. aureus have failed in clinical trials, and the reason for this lack of success remains unclear. As this pathogen continues to rapidly spread on a global scale, it is vital that new approaches to S. aureus vaccination are developed. In this study, we show that activation of antifungal immunity with a β-glucan particle vaccine can be harnessed to direct protection against S. aureus systemic infections in mice. This work broadens the use of the β-glucan particle vaccine system for potential use as a much-needed vaccine targeting S. aureus.