As one of the largest families of angiosperms, the Orchidaceae family is diverse. Dendrobium represents the second largest genus of the Orchidaceae. However, an assembled high-quality genome of species in this genus is lacking. Here, we report a chromosome-scale reference genome of Dendrobium chrysotoxum, an important ornamental and medicinal orchid species. The assembled genome size of D. chrysotoxum was 1.37 Gb, with a contig N50 value of 1.54 Mb. Of the sequences, 95.75% were anchored to 19 pseudochromosomes. There were 30,044 genes predicted in the D. chrysotoxum genome. Two whole-genome polyploidization events occurred in D. chrysotoxum. In terms of the second event, whole-genome duplication (WGD) was also found to have occurred in other Orchidaceae members, which diverged mainly via gene loss immediately after the WGD event occurred; the first duplication was found to have occurred in most monocots (tau event). We identified sugar transporter (SWEET) gene family expansion, which might be related to the abundant medicinal compounds and fleshy stems of D. chrysotoxum. MADS-box genes were identified in D. chrysotoxum, as well as members of TPS and Hsp90 gene families, which are associated with resistance, which may contribute to the adaptive evolution of orchids. We also investigated the interplay among carotenoid, ABA, and ethylene biosynthesis in D. chrysotoxum to elucidate the regulatory mechanisms of the short flowering period of orchids with yellow flowers. The reference D. chrysotoxum genome will provide important insights for further research on medicinal active ingredients and breeding and enhances the understanding of orchid evolution.

Self-incompatibility (SI) is a type of reproductive barrier within plant species and is one of the mechanisms for the formation and maintenance of the high diversity and adaptation of angiosperm species. Approximately 40% of flowering plants are SI species, while only 10% of orchid species are self-incompatible. Intriguingly, as one of the largest genera in Orchidaceae, 72% of Dendrobium species are self-incompatible, accounting for nearly half of the reported SI species in orchids, suggesting that SI contributes to the high diversity of orchid species. However, few studies investigating SI in Dendrobium have been published. This study aimed to address the following questions: (1) How many SI phenotypes are in Dendrobium, and what are they? (2) What is their distribution pattern in the Dendrobium phylogenetic tree? We investigated the flowering time, the capsule set rate, and the pollen tube growth from the representative species of Dendrobium after artificial pollination and analysed their distribution in the Asian Dendrobium clade phylogenetic tree. The number of SI phenotypes exceeded our expectations. The SI type of Dendrobium chrysanthum was the primary type in the Dendrobium SI species. We speculate that there are many different SI determinants in Dendrobium that have evolved recently and might be specific to Dendrobium or Orchidaceae. Overall, this work provides new insights and a comprehensive understanding of Dendrobium SI.

Self-incompatibility affects not only the formation of seeds, but also the evolution of species diversity. A robust understanding of the molecular mechanisms of self-incompatibility is essential for breeding efforts, as well as conservation biology research. In recent years, phenotypic and multiple omics studies have revealed that self-incompatibility in Orchidaceae is mainly concentrated in the subfamily Epidendroideae, and the self-incompatibility phenotypes are diverse, even in the same genus, and hormones (auxin and ethylene), and new male and female determinants might be involved in SI response. This work provides a good foundation for future studies of the evolution and molecular mechanisms of self-incompatibility. We review recent research progress on self-incompatibility in orchids at the morphological, physiological, and molecular levels, provide a general overview of self-incompatibility in orchids, and propose future research directions.

As one of the largest families of transcription factors (TFs) in plants, the WRKY TF family plays a key role in regulating plant responses to various biotic and abiotic stresses. However, there is no confirmed method to quickly identify stress-responsive members from the WRKY gene family. In this study, all reported functional WRKY genes were first analyzed, and the amino acid patterns in response to stress were identified in group II-c (T-R/K-S/T-E/Q/D-V/I/L-E/D-I/V/H/N-L/M-D/E-D-G/E-F/Y-K/R-WRKYG-Q/K-K-A/T-VKN-S/N-P), group II-d (VPA-I/V-S-X-K-M/L/V/I-ADIP-P/A/V-D-D/E-Y/F-S-WRKYGQKPIKGSP-H/Y-PRGYYKCS-S/T-V/M-RGCPARKVER), and group II-e (PSD-S/A/L-WAWRKYGQKPIKGSPYPR-G/S-YYRCSSSKGC). WRKY genes in Dendrobium catenatum were used to validate the accuracy of these patterns. A total of 63 DcaWRKY genes were identified, their gene structures, conserved motifs, and gene expression patterns were analyzed, and a phylogenetic tree was constructed. Gene expression patterns were then analyzed under drought stress, and seven DcaWRKY genes (Dca002550, Dca002715, Dca005648, Dca007842, Dca010430, Dca016437, and Dca006787) were randomly selected to determine their expression levels and verify their expression patterns by quantitative real-time polymerase chain reaction analysis. The identified amino acid patterns were validated by drought-responsive WRKY genes in D. catenatum, confirming the accuracy of these amino acid patterns and providing valuable insights into further research of the WRKY family in D. catenatum.

Dendrobium officinale (DO) is a well-known medicinal and edible plant, yet its impact on the quality of noodles has been infrequently reported. In this study, DO was incorporated into multi-grain flour in varying proportions (0, 2, 4, 6, 8%) to prepare noodles, and their quality was assessed. The percentage increase in DO decreased the cooking loss, whiteness, appearance, and taste of the noodles while simultaneously enhancing their water absorption, adhesiveness, smoothness, and starch digestion resistance. Lower supplemental levels of DO (2–4%) facilitated the water absorption of protein and the formation of a dense and extensive protein network surrounding the partially gelatinized starch, which was characterized by higher relative crystallinity. The highest sensory score (77.4) and greatest content of slowly digestible starch content (38%) were observed in the noodles containing 4% DO. Conversely, higher percentages of DO (6–8%) diluted and compromised the protein network in the cooked noodles, leading to water migration from protein to starch. The excessive polysaccharides from DO tended to complex with fully gelatinized starch, promoting starch aggregation and interactions between starch and non-starch components. This ultimately resulted in the highest adhesiveness and resistant starch content (34%) in the cooked noodles with 8% DO. These findings provide a reference for enhancing noodle quality by regulating the amount of DO added, thereby promoting the application of DO in cereal-based food products.

The high temperature may cause difficult growth or bloom in the summer, which is the key problem limiting the cultivation and application of dahlia. The photosynthetic physiological mechanisms of dahlia under high temperature stress were studied to provide a theoretical basis for expanding the application range of cultivation and annual production. Two dahlia varieties, ‘Tampico’ and ‘Hypnotica Tropical Breeze’, were used as test materials and were treated for 1 d or 2 d at temperatures of 35/30 °C or 40/35 °C (day/night: 14 h/10 h) and then recovered at 25/20 °C for 7 d. A 25/20 °C treatment was used as the control. The results are as follows: (1) High-temperature stress resulted in the chlorophyll (Chl) content, Fv/Fm, transpiration rate (Tr), net photosynthetic rate (Pn), and water potential decreasing significantly, and the Chl content, Tr, and stomatal density of ‘Tampico’ were higher than those of ‘Hypnotica Tropical Breeze’ during the same period. (2) After the two dahlia varieties were treated with high-temperature stress and recovered at 25/20 °C for 7 d, the plant morphology and various physiological indices under the 35/30 °C treatment gradually returned to normal, with ‘Tampico’ in better condition than ‘Hypnotica Tropical Breeze’. (3) Both dahlia varieties could not withstand the stress of 40/35 °C for 2 days.