David Sivak

David Sivak

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Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 May 2012 in Physical Review Letters
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DSDavid Sivak
David Sivak
GCGavin E. Crooks
Gavin E. Crooks
A fundamental problem in modern thermodynamics is how a molecular-scale machine performs useful work, while operating away from thermal equilibrium without excessive dissipation. To this end, we derive a friction tensor that induces a Riemannian manifold on the space of thermodynamic states. Within the linear-response regime, this metric structure controls the dissipation of finite-time transformations, and bestows optimal protocols with many useful properties. We discuss the connection to the existing thermodynamic length formalism, and demonstrate the utility of this metric by solving for optimal control parameter protocols in a simple nonequilibrium model.

19 September 2012 in Physical Review Letters
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SSSusanne Still
Susanne Still
DSDavid Sivak
David Sivak
ABAnthony J. Bell
Anthony J. Bell
GCGavin E. Crooks
Gavin E. Crooks
A system responding to a stochastic driving signal can be interpreted as computing, by means of its dynamics, an implicit model of the environmental variables. The system’s state retains information about past environmental fluctuations, and a fraction of this information is predictive of future ones. The remaining nonpredictive information reflects model complexity that does not improve predictive power, and thus represents the ineffectiveness of the model. We expose the fundamental equivalence between this model inefficiency and thermodynamic inefficiency, measured by dissipation. Our results hold arbitrarily far from thermodynamic equilibrium and are applicable to a wide range of systems, including biomolecular machines. They highlight a profound connection between the effective use of information and efficient thermodynamic operation: any system constructed to keep memory about its environment and to operate with maximal energetic efficiency has to be predictive.

14 August 2019 in Chemical Reviews
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ABAidan I. Brown
Aidan I. Brown
DSDavid Sivak
David Sivak

26 October 2012 in Physical Review E
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PZPatrick R. Zulkowski
Patrick R. Zulkowski
DSDavid Sivak
David Sivak
GCGavin E. Crooks
Gavin E. Crooks
MDMichael R. DeWeese
Michael R. DeWeese
A deeper understanding of nonequilibrium phenomena is needed to reveal the principles governing natural and synthetic molecular machines. Recent work has shown that when a thermodynamic system is driven from equilibrium then, in the linear response regime, the space of controllable parameters has a Riemannian geometry induced by a generalized friction tensor. We exploit this geometric insight to construct closed-form expressions for minimal-dissipation protocols for a particle diffusing in a one-dimensional harmonic potential, where the spring constant, inverse temperature, and trap location are adjusted simultaneously. These optimal protocols are geodesics on the Riemannian manifold and reveal that this simple model has a surprisingly rich geometry. We test these optimal protocols via a numerical implementation of the Fokker-Planck equation and demonstrate that the friction tensor arises naturally from a first-order expansion in temporal derivatives of the control parameters, without appealing directly to linear response theory.

1 June 2014 in Structure
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DKDaniel A. Keedy
Daniel A. Keedy
HBHenry van Den Bedem
Henry van Den Bedem
DSDavid Sivak
David Sivak
GPGregory A. Petsko
Gregory A. Petsko
DRDagmar Ringe
Dagmar Ringe
JFJames S. Fraser
James S. Fraser

18 August 2007 in Nano Letters
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ETEliane H. Trepagnier
Eliane H. Trepagnier
ARAleksandra Radenovic
Aleksandra Radenovic
DSDavid Sivak
David Sivak
PGPhillip Geissler
Phillip Geissler
JLJan Liphardt
Jan Liphardt