Alireza Hayati

Dr. Alireza Hayati

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Research Focus & Metrics

Academic Career Length

2Years (2025-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 March 2025 in Diagnostics
Verified
Journal Article
Open access
PDF file
AHAlireza Hayati
Alireza Hayati
MHMohammad Reza Abdol Homayuni
Mohammad Reza Abdol Homayuni
RSReza Sadeghi
Reza Sadeghi
HAHassan Asadigandomani
Hassan Asadigandomani
MDMohammad Dashtkoohi
Mohammad Dashtkoohi
MSMohammad Soleimani
Mohammad Soleimani
Background/Objectives: Diabetic retinopathy (DR) remains a leading cause of preventable blindness, with its global prevalence projected to rise sharply as diabetes incidence increases. Early detection and timely management are critical to reducing DR-related vision loss. Optical Coherence Tomography Angiography (OCTA) now enables non-invasive, layer-specific visualization of the retinal vasculature, facilitating more precise identification of early microvascular changes. Concurrently, advancements in artificial intelligence (AI), particularly deep learning (DL) architectures such as convolutional neural networks (CNNs), attention-based models, and Vision Transformers (ViTs), have revolutionized image analysis. These AI-driven tools substantially enhance the sensitivity, specificity, and interpretability of DR screening. Methods: A systematic review of PubMed, Scopus, WOS, and Embase databases, including quality assessment of published studies, investigating the result of different AI algorithms with OCTA parameters in DR patients was conducted. The variables of interest comprised training databases, type of image, imaging modality, number of images, outcomes, algorithm/model used, and performance metrics. Results: A total of 32 studies were included in this systematic review. In comparison to conventional ML techniques, our results indicated that DL algorithms significantly improve the accuracy, sensitivity, and specificity of DR screening. Multi-branch CNNs, ensemble architectures, and ViTs were among the sophisticated models with remarkable performance metrics. Several studies reported that accuracy and area under the curve (AUC) values were higher than 99%. Conclusions: This systematic review underscores the transformative potential of integrating advanced DL and machine learning (ML) algorithms with OCTA imaging for DR screening. By synthesizing evidence from 32 studies, we highlight the unique capabilities of AI-OCTA systems in improving diagnostic accuracy, enabling early detection, and streamlining clinical workflows. These advancements promise to enhance patient management by facilitating timely interventions and reducing the burden of DR-related vision loss. Furthermore, this review provides critical recommendations for clinical practice, emphasizing the need for robust validation, ethical considerations, and equitable implementation to ensure the widespread adoption of AI-OCTA technologies. Future research should focus on multicenter studies, multimodal integration, and real-world validation to maximize the clinical impact of these innovative tools.

5 May 2025 in medRxiv
Verified
Preprint
Open access
PDF file
AHAlireza Hayati
Alireza Hayati
RARoya Arian
Roya Arian
NSNarges Saeedizadeh
Narges Saeedizadeh
WRWilliam Rojas
William Rojas
RARupesh Agrawal
Rupesh Agrawal
Raheleh KafiehRaheleh Kafieh
Raheleh Kafieh
The choroid layer plays a critical role in maintaining outer retinal health and is implicated in numerous vision-threatening diseases such as diabetic retinopathy, age-related macular degeneration, and diabetic macular edema. While Enhanced-Depth Imaging Optical Coherence Tomography (EDI-OCT) enables detailed visualization of the choroid, accurate manual segmentation remains timeconsuming and subjective. In this study, we introduce RFA-U-Net, a novel deep learning model designed for precise choroid segmentation in OCT images. Building upon RETFound—a foundation model pre-trained on 1.6 million retinal images—RFA-U-Net retains its encoder to leverage rich hierarchical feature representations while addressing its general-purpose segmentation limitations through three key innovations: (1) attention gates to dynamically emphasize choroid-specific features, (2) feature fusion strategies to maintain contextual integrity during decoding, and (3) standard U-Net up-convolutions to ensure accurate boundary reconstruction. Extensive experiments demonstrate that RFA-U-Net outperforms pre-trained CNN-U-Net variants and state-of-the-art (SOTA) choroidal segmentation models. Specifically, it achieves a Dice score of 95.04 ± 0.25% and a Jaccard index of 90.59 ± 0.30% on an independent test set, highlighting its superior accuracy and robustness, particularly in challenging clinical scenarios with variable OCT image quality. These findings underscore the potential of combining foundation models and attention mechanisms to advance precision and reliability in ophthalmic diagnostics, paving the way for scalable and efficient deployment in clinical and community-based screening settings.

26 April 2026 in bioRxiv
Verified
Preprint
Open access
AHAlireza Hayati
Alireza Hayati
JGJian Gong
Jian Gong
VNVaishnavi Nagesh
Vaishnavi Nagesh
PAPinar Avci
Pinar Avci
AOAriel Yuhan Ong
Ariel Yuhan Ong
LSLauren M. Sanders
Lauren M. Sanders
Space-biology imaging studies are often constrained by severe data scarcity, limiting the development of robust machine-learning biomarkers. Rodent spaceflight and space-analog datasets provide an important preclinical setting for testing transfer-learning strategies, but the extent to which human retinal foundation models can generalize to rodent optical coherence tomography (OCT) remains unclear. Here, we benchmark cross-species adaptation of RETFound, a human retinal Vision Transformer pretrained on 1.6 million retinal images, for chronological age prediction from Brown Norway rat OCT B-scans in the NASA Open Science Data Repository dataset OSD-679. We adapted RETFound using Low-Rank Adaptation (LoRA) and evaluated performance on control animals under matched 3-fold rat-level cross-validation. We compared RETFound+LoRA with a strong ImageNet-pretrained Xception baseline under matched protocols and included a scratch/random ViT as a supplementary negative-control architecture check. Metrics included mean absolute error (MAE), R 2 , and inter-eye mean absolute difference (MAD). RETFound+LoRA achieved MAE = 26.20 ± 5.03 days with R 2 = 0.744 ± 0.049. However, Xception performed better in the primary benchmark (MAE = 19.01 ± 7.67 days, R 2 = 0.853 ± 0.082), and the matched-fold comparison favored Xception, although this result should be interpreted cautiously given the small number of folds. Inter-eye consistency was maintained across the matched control evaluation, and saliency maps localized model attention to anatomically plausible inner retinal regions. Together, these results show that human retinal foundation models can transfer to rodent OCT in a scientifically useful way, but also that strong CNN baselines may outperform transformer-based models in small-sample cross-species settings. This preprint provides a reproducible benchmark and baseline framework for future retinal biomarker development in space biology. Significance Statement: Space-biology imaging studies are intrinsically data-limited. This preprint provides a reproducible cross-species benchmark for adapting Earth-trained retinal models to rodent OCT under small-sample conditions, highlights the value of strong CNN baselines, and offers a reusable starting point for future retinal biomarker development in space-relevant datasets.