Harrison X Bai

Dr. Harrison X Bai


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2020 in Radiology
Verified
Journal Article
Closed access
HBHarrison X Bai
Harrison X Bai
BHBen Hsieh
Ben Hsieh
ZXZeng Xiong
Zeng Xiong
KHKasey Halsey
Kasey Halsey
JCJi Whae Choi
Ji Whae Choi
WLWeihua Liao
Weihua Liao
Background Despite its high sensitivity in diagnosing COVID-19 in a screening population, chest CT appearances of COVID 19 pneumonia are thought to be non-specific. Purpose To assess the performanc...

1 September 2020 in Radiology
Verified
Journal Article
Closed access
HBHarrison X Bai
Harrison X Bai
RWRobin Wang
Robin Wang
ZXZeng Xiong
Zeng Xiong
BHBen Hsieh
Ben Hsieh
KCKen Chang
Ken Chang
WLWeihua Liao
Weihua Liao
Background COVID-19 and pneumonia of other etiology share similar CT characteristics, contributing to the challenges in differentiating them with high accuracy. Purpose To establish and ev...

15 April 2020 in Clinical Cancer Research
Verified
Journal Article
Closed access
PDF file
IXIanto Lin Xi
Ianto Lin Xi
YZYijun Zhao
Yijun Zhao
RWRobin Wang
Robin Wang
MCMarcello Chang
Marcello Chang
SPSubhanik Purkayastha
Subhanik Purkayastha
SSS. William Stavropoulos
S. William Stavropoulos
Purpose: With increasing incidence of renal mass, it is important to make a pretreatment differentiation between benign renal mass and malignant tumor. We aimed to develop a deep learning model that distinguishes benign renal tumors from renal cell carcinoma (RCC) by applying a residual convolutional neural network (ResNet) on routine MR imaging. Experimental Design: Preoperative MR images (T2-weighted and T1-postcontrast sequences) of 1,162 renal lesions definitely diagnosed on pathology or imaging in a multicenter cohort were divided into training, validation, and test sets (70:20:10 split). An ensemble model based on ResNet was built combining clinical variables and T1C and T2WI MR images using a bagging classifier to predict renal tumor pathology. Final model performance was compared with expert interpretation and the most optimized radiomics model. Results: Among the 1,162 renal lesions, 655 were malignant and 507 were benign. Compared with a baseline zero rule algorithm, the ensemble deep learning model had a statistically significant higher test accuracy (0.70 vs. 0.56, P = 0.004). Compared with all experts averaged, the ensemble deep learning model had higher test accuracy (0.70 vs. 0.60, P = 0.053), sensitivity (0.92 vs. 0.80, P = 0.017), and specificity (0.41 vs. 0.35, P = 0.450). Compared with the radiomics model, the ensemble deep learning model had higher test accuracy (0.70 vs. 0.62, P = 0.081), sensitivity (0.92 vs. 0.79, P = 0.012), and specificity (0.41 vs. 0.39, P = 0.770). Conclusions: Deep learning can noninvasively distinguish benign renal tumors from RCC using conventional MR imaging in a multi-institutional dataset with good accuracy, sensitivity, and specificity comparable with experts and radiomics.

1 May 2021 in The Lancet Digital Health
Verified
Journal Article
Open access
ZJZhicheng Jiao
Zhicheng Jiao
JCJi Whae Choi
Ji Whae Choi
KHKasey Halsey
Kasey Halsey
TTThi My Linh Tran
Thi My Linh Tran
BHBen Hsieh
Ben Hsieh
HBHarrison X Bai
Harrison X Bai
Chest x-ray is a relatively accessible, inexpensive, fast imaging modality that might be valuable in the prognostication of patients with COVID-19. We aimed to develop and evaluate an artificial intelligence system using chest x-rays and clinical data to predict disease severity and progression in patients with COVID-19. We did a retrospective study in multiple hospitals in the University of Pennsylvania Health System in Philadelphia, PA, USA, and Brown University affiliated hospitals in Providence, RI, USA. Patients who presented to a hospital in the University of Pennsylvania Health System via the emergency department, with a diagnosis of COVID-19 confirmed by RT-PCR and with an available chest x-ray from their initial presentation or admission, were retrospectively identified and randomly divided into training, validation, and test sets (7:1:2). Using the chest x-rays as input to an EfficientNet deep neural network and clinical data, models were trained to predict the binary outcome of disease severity (ie, critical or non-critical). The deep-learning features extracted from the model and clinical data were used to build time-to-event models to predict the risk of disease progression. The models were externally tested on patients who presented to an independent multicentre institution, Brown University affiliated hospitals, and compared with severity scores provided by radiologists. 1834 patients who presented via the University of Pennsylvania Health System between March 9 and July 20, 2020, were identified and assigned to the model training (n=1285), validation (n=183), or testing (n=366) sets. 475 patients who presented via the Brown University affiliated hospitals between March 1 and July 18, 2020, were identified for external testing of the models. When chest x-rays were added to clinical data for severity prediction, area under the receiver operating characteristic curve (ROC-AUC) increased from 0·821 (95% CI 0·796–0·828) to 0·846 (0·815–0·852; p<0·0001) on internal testing and 0·731 (0·712–0·738) to 0·792 (0·780–0 ·803; p<0·0001) on external testing. When deep-learning features were added to clinical data for progression prediction, the concordance index (C-index) increased from 0·769 (0·755–0·786) to 0·805 (0·800–0·820; p<0·0001) on internal testing and 0·707 (0·695–0·729) to 0·752 (0·739–0·764; p<0·0001) on external testing. The image and clinical data combined model had significantly better prognostic performance than combined severity scores and clinical data on internal testing (C-index 0·805 vs 0·781; p=0·0002) and external testing (C-index 0·752 vs 0·715; p<0·0001). In patients with COVID-19, artificial intelligence based on chest x-rays had better prognostic performance than clinical data or radiologist-derived severity scores. Using artificial intelligence, chest x-rays can augment clinical data in predicting the risk of progression to critical illness in patients with COVID-19. Brown University, Amazon Web Services Diagnostic Development Initiative, Radiological Society of North America, National Cancer Institute and National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health.

1 June 2021 in Radiology
Verified
Journal Article
Closed access
JKJeffrey P. Kanne
Jeffrey P. Kanne
HBHarrison X Bai
Harrison X Bai
ABAdam Bernheim
Adam Bernheim
MCMichael Chung
Michael Chung
LHLinda B Haramati
Linda B Haramati
NSNicola Sverzellati
Nicola Sverzellati
Infection by SARS-CoV-2 virus ranges from asymptomatic to severe and sometimes fatal disease, most frequently the result of acute lung injury. The role of imaging has evolved during the pandemic, i...

1 June 2021 in EBioMedicine
Verified
Journal Article
Open access
FEFeyisope R. Eweje
Feyisope R. Eweje
BBBingting Bao
Bingting Bao
JWJing Wu
Jing Wu
DDDeepa Dalal
Deepa Dalal
WLWei-Hua Liao
Wei-Hua Liao
LSLisa States
Lisa States
Radiologists have difficulty distinguishing benign from malignant bone lesions because these lesions may have similar imaging appearances. The purpose of this study was to develop a deep learning algorithm that can differentiate benign and malignant bone lesions using routine magnetic resonance imaging (MRI) and patient demographics. 1,060 histologically confirmed bone lesions with T1- and T2-weighted pre-operative MRI were retrospectively identified and included, with lesions from 4 institutions used for model development and internal validation, and data from a fifth institution used for external validation. Image-based models were generated using the EfficientNet-B0 architecture and a logistic regression model was trained using patient age, sex, and lesion location. A voting ensemble was created as the final model. The performance of the model was compared to classification performance by radiology experts. The cohort had a mean age of 30±23 years and was 58.3% male, with 582 benign lesions and 478 malignant. Compared to a contrived expert committee result, the ensemble deep learning model achieved (ensemble vs. experts): similar accuracy (0·76 vs. 0·73, p=0·7), sensitivity (0·79 vs. 0·81, p=1·0) and specificity (0·75 vs. 0·66, p=0·48), with a ROC AUC of 0·82. On external testing, the model achieved ROC AUC of 0·79. Deep learning can be used to distinguish benign and malignant bone lesions on par with experts. These findings could aid in the development of computer-aided diagnostic tools to reduce unnecessary referrals to specialized centers from community clinics and limit unnecessary biopsies. This work was funded by a Radiological Society of North America Research Medical Student Grant (#RMS2013) and supported by the Amazon Web Services Diagnostic Development Initiative.