Shaobo Duan

Dr. Shaobo Duan


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 November 2016 in European Journal of Radiology
Verified
Journal Article
Closed access
YGYongyan Gao
Yongyan Gao
PLPing Liang
Ping Liang
XYXiaoling Yu
Xiaoling Yu
JYJie Yu
Jie Yu
ZCZhigang Cheng
Zhigang Cheng
HHHui Huang
Hui Huang

1 August 2020 in Computational Intelligence and Neuroscience
Verified
Journal Article
Open access
PDF file
JMJingzhe Ma
Jingzhe Ma
SDShaobo Duan
Shaobo Duan
YZYe Zhang
Ye Zhang
JWJing Wang
Jing Wang
ZWZongmin Wang
Zongmin Wang
HMHuimin Ma
Huimin Ma
Ultrasonography is widely used in the clinical diagnosis of thyroid nodules. Ultrasound images of thyroid nodules have different appearances, interior features, and blurred borders that are difficult for a physician to diagnose into malignant or benign types merely through visual recognition. The development of artificial intelligence, especially deep learning, has led to great advances in the field of medical image diagnosis. However, there are some challenges to achieve precision and efficiency in the recognition of thyroid nodules. In this work, we propose a deep learning architecture, you only look once v3 dense multireceptive fields convolutional neural network (YOLOv3-DMRF), based on YOLOv3. It comprises a DMRF-CNN and multiscale detection layers. In DMRF-CNN, we integrate dilated convolution with different dilation rates to continue passing the edge and the texture features to deeper layers. Two different scale detection layers are deployed to recognize the different sizes of the thyroid nodules. We used two datasets to train and evaluate the YOLOv3-DMRF during the experiments. One dataset includes 699 original ultrasound images of thyroid nodules collected from a local health physical center. We obtained 10,485 images after data augmentation. Another dataset is an open-access dataset that includes ultrasound images of 111 malignant and 41 benign thyroid nodules. Average precision (AP) and mean average precision (mAP) are used as the metrics for quantitative and qualitative evaluations. We compared the proposed YOLOv3-DMRF with some state-of-the-art deep learning networks. The experimental results show that YOLOv3-DMRF outperforms others on mAP and detection time on both the datasets. Specifically, the values of mAP and detection time were 90.05 and 95.23% and 3.7 and 2.2 s, respectively, on the two test datasets. Experimental results demonstrate that the proposed YOLOv3-DMRF is efficient for detection and recognition of thyroid nodules for ultrasound images.

2 September 2022 in Frontiers in Oncology
Verified
Journal Article
Open access
LZLinlin Zhang
Linlin Zhang
QQQinghua Qi
Qinghua Qi
QLQian Li
Qian Li
SRShanshan Ren
Shanshan Ren
SLShunhua Liu
Shunhua Liu
LZLianzhong Zhang
Lianzhong Zhang
Objective: The purpose of this study was to investigate the preoperative prediction of Cytokeratin (CK) 19 expression in patients with hepatocellular carcinoma (HCC) by machine learning-based ultrasomics.Methods: We retrospectively analyzed 214 patients with pathologically confirmed HCC who received CK19 immunohistochemical staining. Through random stratified sampling (ratio, 8:2), patients from institutions I and II were divided into training dataset (n = 143) and test dataset (n = 36), and patients from institution III served as external validation dataset (n = 35). All gray-scale ultrasound images were preprocessed, and then the regions of interest were then manually segmented by two sonographers. A total of 1409 ultrasomics features were extracted from the original and derived images. Next, the intraclass correlation coefficient, variance threshold, mutual information, and embedded method were applied to feature dimension reduction. Finally, the clinical model, ultrasonics model, and combined model were constructed by eXtreme Gradient Boosting algorithm. Model performance was assessed by area under the receiver operating characteristic curve (AUC), sensitivity, specificity, and accuracy.Results: A total of 12 ultrasomics signatures were used to construct the ultrasomics models. In addition, 21 clinical features were used to construct the clinical model, including gender, age, Child-Pugh classification, hepatitis B surface antigen/hepatitis C virus antibody (positive/negative), cirrhosis (yes/no), splenomegaly (yes/no), tumor location, tumor maximum diameter, tumor number, alpha-fetoprotein, alanine aminotransferase, aspartate aminotransferase, alkaline phosphatase, glutamyl-transpeptidase, albumin, total bilirubin, conjugated bilirubin, creatinine, prothrombin time, fibrinogen, and international normalized ratio. The AUC of the ultrasomics model was 0.789 (0.621 – 0.907) and 0.787 (0.616 – 0.907) in the test and validation datasets, respectively. However, the performance of the combined model covering clinical features and ultrasomics signatures improved significantly. Additionally, the AUC (95% CI), sensitivity, specificity, and accuracy were 0.867 (0.712 – 0.957), 0.750, 0.875, 0.861, and 0.862 (0.703 – 0.955), 0.833, 0.862, and 0.857 in the test dataset and external validation dataset, respectively.Conclusion: Ultrasomics signatures could be used to predict the expression of CK19 in HCC patients. The combination of clinical features and ultrasomics signatures showed excellent effects, which significantly improved prediction accuracy and robustness.

22 November 2022 in Journal of Ultrasound in Medicine
Verified
Journal Article
Open access
LZLinlin Zhang
Linlin Zhang
SDShaobo Duan
Shaobo Duan
QQQinghua Qi
Qinghua Qi
QLQian Li
Qian Li
SRShanshan Ren
Shanshan Ren
LZLianzhong Zhang
Lianzhong Zhang
Objectives: To investigate the ability of ultrasomics to predict Ki‐67 expression in hepatocellular carcinoma (HCC).Methods: A total of 244 patients from three hospitals were retrospectively recruited (training dataset, n = 168; test dataset, n = 43; and validation dataset, n = 33). Lesion segmentation of the ultrasound images was performed manually by two radiologists. In total, 1409 ultrasomics features were extracted. Feature selection was conducted using the intra‐class correlation coefficient, variance threshold, mutual information, and recursive feature elimination plus eXtreme Gradient Boosting. The support vector machine was combined with the learning curve and grid search parameter tuning to construct the clinical, ultrasomics, and combined models. The predictive performance of the models was assessed using the area under the receiver operating characteristic curve (AUC), sensitivity, specificity and accuracy.Results: The ultrasomics model performed well on the training, test, and validation datasets. The AUC (95% confidence interval [CI]) for these datasets were 0.955 (0.912–0.981), 0.861 (0.721–0.947), and 0.665 (0.480–0.819), respectively. The combination of ultrasomics and clinical features significantly improved model performance on all three datasets. The AUC (95% CI), sensitivity, specificity, and accuracy were 0.986 (0.955–0.998), 0.973, 0.840, and 0.869 on the training dataset; 0.871 (0.734–0.954), 0.750, 0.829, and 0.814 on the test dataset; and 0.742 (0.560–0.878), 0.714, 0.808, and 0.788 on the validation dataset, respectively.Conclusions: Ultrasomics was proved to be a potential noninvasive method to predict Ki‐67 expression in HCC.

14 November 2024 in Frontiers in Oncology
Verified
Journal Article
Open access
PDF file
YHYiwen Hu
Yiwen Hu
LZLinlin Zhang
Linlin Zhang
QQQinghua Qi
Qinghua Qi
SRShanshan Ren
Shanshan Ren
SWSimeng Wang
Simeng Wang
LZLianzhong Zhang
Lianzhong Zhang
Objective: The objective of this study is to build and verify the performance of machine learning-based ultrasomics in predicting the objective response to combination therapy involving a tyrosine kinase inhibitor (TKI) and anti-PD-1 antibody for individuals with unresectable hepatocellular carcinoma (HCC). Radiomic features can reflect the internal heterogeneity of the tumor and changes in its microenvironment. These features are closely related to pathological changes observed in histology, such as cellular necrosis and fibrosis, providing crucial non-invasive biomarkers to predict patient treatment response and prognosis.Methods: Clinical, pathological, and pre-treatment ultrasound image data of 134 patients with recurrent unresectable or advanced HCC who treated with a combination of TKI and anti-PD-1 antibody therapy at Henan Provincial People’s Hospital and the First Affiliated Hospital of Zhengzhou University between December 2019 and November 2023 were collected and retrospectively analyzed. Using stratified random sampling, patients from the two hospitals were assigned to training cohort (n = 93) and validation cohort (n = 41) at a 7:3 ratio. After preprocessing the ultrasound images, regions of interest (ROIs) were delineated. Ultrasomic features were extracted from the images for dimensionality reduction and feature selection. By utilizing the extreme gradient boosting (XGBoost) algorithm, three models were developed: a clinical model, an ultrasomic model, and a combined model. By analyzing the area under the receiver operating characteristic (ROC) curve (AUC), specificity, sensitivity, and accuracy, the predicted performance of the models was evaluated. In addition, we identified the optimal cutoff for the radiomic score using the Youden index and applied it to stratify patients. The Kaplan-Meier (KM) survival curves were used to examine differences in progression-free survival (PFS) between the two groups.Results: Twenty ultrasomic features were selected for the construction of the ultrasomic model. The AUC of the ultrasomic model for the training cohort and validation cohort were 0.999 (95%CI: 0.997-1.000) and 0.828 (95%CI: 0.690-0.966), which compared significant favorably to those of the clinical model [AUC = 0.876 (95%CI: 0.815-0.936) for the training cohort, 0.766 (95%CI: 0.597-0.935) for the validation cohort]. Compared to the ultrasomic model, the combined model demonstrated comparable performance within the training cohort (AUC = 0.977, 95%CI: 0.957-0.998) but higher performance in the validation cohort (AUC = 0.881, 95%CI: 0.758-1.000). However, there was no statistically significant difference (p > 0.05). Furthermore, ultrasomic features were associated with PFS, which was significantly different between patients with radiomic scores (Rad-score) greater than 0.057 and those with Rad-score less than 0.057 in both the training (HR = 0.488, 95% CI: 0.299-0.796, p = 0.003) and validation cohorts (HR = 0.451, 95% CI: 0.229-0.887, p = 0.02).Conclusion: The ultrasomic features demonstrates excellent performance in accurately predicting the objective response to TKI in combination with anti-PD-1 antibody immunotherapy among patients with unresectable or advanced HCC.

6 June 2025 in Scientific Reports
Verified
Journal Article
Open access
PDF file
SWShuaiyang Wang
Shuaiyang Wang
HCHe Chang
He Chang
NLNa Li
Na Li
DZDanye Zhu
Danye Zhu
ZWZichao Wang
Zichao Wang
SDShaobo Duan
Shaobo Duan
Efficient utilization of cellulose resources is of great significance to environmental protection and to solve the crisis of global energy shortage. In the present work, a polysaccharide (CGP-TS) was successfully produced by Chaetomium globosum CGMCC 6882 from waste tobacco stalk via submerged fermentation. Chemical composition analysis showed that the carbohydrate and protein contents in CGP-TS were 92.55% ± 3.16% and 4.73% ± 1.04%, respectively. Structural characterization indicated that CGP-TS was not pectin and composed of rhamnose, arabinose, galactose, glucose and xylose in a molar ratio of 22.2166: 9.8269: 36.2455: 3.3111: 0.416, and its molecular weight was 613.235 kDa. In vitro bioactivity and potential application investigation showed that antioxidant activities of CGP-TS against DPPH, ABTS, hydroxyl and superoxide radicals were positively correlated to its concentration from 0.5 mg/mL to 2.5 mg/mL. Meanwhile, CGP-TS exhibited immunomodulatory activity via enhancing the phagocytic activity and promoting the cytokines (TNF-α, IL-1β, IL-6 and NO) release of RAW 264.7 macrophages.