Rocky de Nys

Prof. Rocky de Nys


Research Focus & Metrics

Academic Career Length

37Years (1990-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 July 2012 in Biofouling
Verified
Journal Article
Open access
IFIsla Fitridge
Isla Fitridge
TDTim Dempster
Tim Dempster
JGJana Guenther
Jana Guenther
RNRocky de Nys
Rocky de Nys
Biofouling in marine aquaculture is a specific problem where both the target culture species and/or infrastructure are exposed to a diverse array of fouling organisms, with significant production impacts. In shellfish aquaculture the key impact is the direct fouling of stock causing physical damage, mechanical interference, biological competition and environmental modification, while infrastructure is also impacted. In contrast, the key impact in finfish aquaculture is the fouling of infrastructure which restricts water exchange, increases disease risk and causes deformation of cages and structures. Consequently, the economic costs associated with biofouling control are substantial. Conservative estimates are consistently between 5–10% of production costs (equivalent to US$ 1.5 to 3 billion yr−1), illustrating the need for effective mitigation methods and technologies. The control of biofouling in aquaculture is achieved through the avoidance of natural recruitment, physical removal and the use of antifoulants. However, the continued rise and expansion of the aquaculture industry and the increasingly stringent legislation for biocides in food production necessitates the development of innovative antifouling strategies. These must meet environmental, societal, and economic benchmarks while effectively preventing the settlement and growth of resilient multi-species consortia of biofouling organisms.

1 November 1996 in Journal of Bacteriology
Verified
Journal Article
Closed access
PDF file
MGMichael Givskov
Michael Givskov
RNRocky de Nys
Rocky de Nys
MMM Manefield
M Manefield
LGL Gram
L Gram
RMR Maximilien
R Maximilien
SKS Kjelleberg
S Kjelleberg
Acylated homoserine lactones (AHLs) play a widespread role in intercellular communication among bacteria. The Australian macroalga Delisea pulchra produces secondary metabolites which have structural similarities to AHL molecules. We report here that these metabolites inhibited AHL-controlled processes in prokaryotes. Our results suggest that the interaction between higher organisms and their surface-associated bacteria may be mediated by interference with bacterial regulatory systems.

1 May 2019 in Algal Research
Verified
Journal Article
Open access
JKJoel T. Kidgell
Joel T. Kidgell
MMMarie Magnusson
Marie Magnusson
RNRocky de Nys
Rocky de Nys
CGChristopher R.K. Glasson
Christopher R.K. Glasson

1 September 1999 in Molecular Microbiology
Verified
Journal Article
Open access
PDF file
MHMatthew T.G. Holden
Matthew T.G. Holden
SCSiri Ram Chhabra
Siri Ram Chhabra
RNRocky de Nys
Rocky de Nys
PSPaul Stead
Paul Stead
NBNigel J. Bainton
Nigel J. Bainton
PWPaul Williams
Paul Williams
In cell‐free Pseudomonas aeruginosa culture supernatants, we identified two compounds capable of activating an N‐acylhomoserine lactone (AHL) biosensor. Mass spectrometry and NMR spectroscopy revealed that these compounds were not AHLs but the diketopiperazines (DKPs), cyclo(ΔAla‐l‐Val) and cyclo(l‐Pro‐l‐Tyr) respectively. These compounds were also found in cell‐free supernatants from Proteus mirabilis, Citrobacter freundii and Enterobacter agglomerans [cyclo(ΔAla‐l‐Val) only]. Although both DKPs were absent from Pseudomonas fluorescens and Pseudomonas alcaligenes, we isolated, from both pseudomonads, a third DKP, which was chemically characterized as cyclo(l‐Phe‐l‐Pro). Dose–response curves using a LuxR‐based AHL biosensor indicated that cyclo(ΔAla‐l‐Val), cyclo(l‐Pro‐l‐Tyr) and cyclo(l‐Phe‐l‐Pro) activate the biosensor in a concentration‐dependent manner, albeit at much higher concentrations than the natural activator N‐(3‐oxohexanoyl)‐l‐homoserine lactone (3‐oxo‐C6‐HSL). Competition studies showed that cyclo(ΔAla‐l‐Val), cyclo(l‐Pro‐l‐Tyr) and cyclo(l‐Phe‐l‐Pro) antagonize the 3‐oxo‐C6‐HSL‐mediated induction of bioluminescence, suggesting that these DKPs may compete for the same LuxR‐binding site. Similarly, DKPs were found to be capable of activating or antagonizing other LuxR‐based quorum‐sensing systems, such as the N‐butanoylhomoserine lactone‐dependent swarming motility of Serratia liquefaciens. Although the physiological role of these DKPs has yet to be established, their activity suggests the existence of cross talk among bacterial signalling systems.

1 February 1999 in Microbiology
Verified
Journal Article
Closed access
MMMichael Manefield
Michael Manefield
RNRocky de Nys
Rocky de Nys
Naresh KumarNaresh Kumar
Naresh Kumar
RRRead Roger
Read Roger
MGMichael Givskov
Michael Givskov
SKStaffan Kjelleberg
Staffan Kjelleberg
Summary: Acylated homoserine lactone (AHL)-mediated gene expression controls phenotypes involved in colonization, often specifically of higher organisms, in both marine and terrestrial environments. The marine red alga Delisea pulchra produces halogenated furanones which resemble AHLs structurally and show inhibitory activity at ecologically realistic concentrations in AHL bioassays. Evidence is presented that halogenated furanones displace tritiated OHHL [N-3- (oxohexanoy1)-L-homoserine lactone] from Escherichia coli cells overproducing LuxR with potencies corresponding to their respective inhibitory activities in an AHL-regulated bioluminescence assay, indicating that this is the mechanism by which furanones inhibit AHL-dependent phenotypes. Alternative mechanisms for this phenomenon are also addressed. General metabolic disruption was assessed with two-dimensional PAGE, revealing limited non- AHL-related effects. A direct chemical interaction between the algal compounds and AHLs, as monitored by 1H NMR spectroscopy, was shown not to occur in vitro. These results support the contention that furanones, at the concentrations produced by the alga, can control bacterial colonization of surfaces by specifically interfering with AHL-mediated gene expression at the level of the LuxR protein.

30 June 2015 in Journal of Applied Phycology
Verified
Journal Article
Closed access
PDF file
AAAlex R. Angell
Alex R. Angell
LMLeonardo Mata
Leonardo Mata
RNRocky de Nys
Rocky de Nys
NPNicholas Paul
Nicholas Paul