Jaco de Smit

Dr. Jaco de Smit

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2021 in Science of The Total Environment
Verified
Journal Article
Open access
JSJaco de Smit
Jaco de Smit
AAAndrea Anton
Andrea Anton
CMCecilia Martin
Cecilia Martin
SRSusann Rossbach
Susann Rossbach
TBTjeerd J. Bouma
Tjeerd J. Bouma
CDCarlos M. Duarte
Carlos M. Duarte
Nearshore biogenic habitats are known to trap sediments, and may therefore also accumulate biofouled, non-buoyant microplastics. Using a current-generating field flume (TiDyFLOW), we experimentally assessed the mechanisms of microplastic trapping of two size classes, 0.5 mm and 2.5 mm particle size, by three contrasting types of biogenic habitats: 1) seagrasses, 2) macroalgae, and 3) scleractinian corals. Results showed that benthic organisms with a complex architecture and rough surface - such as hard corals - trap the highest number of microplastics in their aboveground structure. Sediment was however the major microplastic sink, accumulating 1 to 2 orders of magnitude more microplastics than the benthic structure. Microplastic accumulation in the sediment could be explained by near-bed turbulent kinetic energy (TKE), indicating that this is governed by the same hydrodynamic processes leading to sediment trapping. Thus, the most valuable biogenic habitats in terms of nursery and coastal protection services also have the highest capacity of accumulating microplastics in their sediments. A significantly larger fraction of 0.5 mm particles was trapped in the sediment compared to 2.5 mm particles, because especially the smaller microplastics are entrained into the sediment. Present observations contribute to explaining why especially microplastics smaller than 1 mm are missing in surface waters.

4 January 2018 in Water Resources Research
Verified
Journal Article
Open access
PDF file
ABAnne Baar
Anne Baar
JSJaco de Smit
Jaco de Smit
WUWim Uijttewaal
Wim Uijttewaal
MKMaarten G. Kleinhans
Maarten G. Kleinhans
Large scale morphology, in particular meander bend depth, bar dimensions and bifurcation dynamics, are greatly affected by the deflection of sediment transport on transverse bed slopes due to gravity and by secondary flows. Overestimating the transverse bed slope effect in morphodynamic models leads to flattening of the morphology, while underestimating leads to unrealistically steep bars and banks and a higher braiding index downstream. However, existing transverse bed slope predictors are based on a small set of experiments with a minor range of flow conditions and sediment sizes, and in practice models are calibrated on measured morphology. The objective of this research is to experimentally quantify the transverse bed slope effect for a large range of near-bed flow conditions with varying secondary flow intensity, sediment sizes (0.17–4 mm), sediment transport mode and bedstate to test existing predictors. We conducted over 200 experiments in a rotating annular flume with counter-rotating floor, which allows control of the secondary flow intensity separate from the streamwise flow velocity. Flow velocity vectors were determined with a calibrated analytical model accounting for rough bed conditions. We isolated separate effects of all important parameters on the transverse slope. Resulting equilibrium transverse slopes show a clear trend with varying sediment mobilities and secondary flow intensities that deviate from known predictors depending on Shields number, and strongly depend on bedstate and sediment transport mode. Fitted functions are provided for application in morphodynamic modelling.

7 May 2020 in Journal of Ecology
Verified
Journal Article
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RJRebecca K. James
Rebecca K. James
MCMarjolijn J. A. Christianen
Marjolijn J. A. Christianen
MKMarieke M. van Katwijk
Marieke M. van Katwijk
JSJaco de Smit
Jaco de Smit
EBElisabeth S. Bakker
Elisabeth S. Bakker
TBTjeerd J. Bouma
Tjeerd J. Bouma
Seagrasses provide an important ecosystem service by creating a stable erosion‐resistant seabed that contributes to effective coastal protection. Variable morphologies and life‐history strategies, however, are likely to impact the sediment stabilization capacity of different seagrass species. We question how opportunistic invasive species and increasing grazing by megaherbivores may alter sediment stabilization services provided by established seagrass meadows, using the Caribbean as a case study. Utilizing two portable field‐flumes that simulate unidirectional and oscillatory flow regimes, we compared the sediment stabilization capacity of natural seagrass meadows in situ under current‐ and wave‐dominated regimes. Monospecific patches of a native (Thalassia testudinum) and an invasive (Halophila stipulacea) seagrass species were compared, along with the effect of three levels of megaherbivore grazing on T. testudinum: ungrazed, lightly grazed and intensively grazed. For both hydrodynamic regimes, the long‐leaved, dense meadows of the climax species, T. testudinum provided the highest stabilization. However, the loss of above‐ground biomass by intensive grazing reduced the capacity of the native seagrass to stabilize the surface sediment. Caribbean seagrass meadows are presently threatened by the rapid spread of the invasive opportunistic seagrass, H. stipulacea. The dense meadows of H. stipulacea were found to accumulate fine sediment, and thereby, appear to be effective in reducing bottom shear stress during calm periods. This fine sediment within the invasive meadows, however, is easily resuspended by hydrodynamic forces, and the low below‐ground biomass of H. stipulacea make it susceptible to uprooting during storm events, potentially leaving large regions vulnerable to erosion. Overall, this present study highlights that intensive megaherbivore grazing and opportunistic invasive species threaten the coastal protection services provided by mildly grazed native species. Synthesis. Seagrass meadows of dense, long‐leaved species stabilize the sediment surface and maintain the seabed integrity, thereby contributing to coastal protection. These services are threatened by intensive megaherbivore grazing, which reduces the stability of the surface sediment, and opportunistic invasive species, which are susceptible to uprooting in storms and thereby can leave the seabed vulnerable to erosion.

4 November 2022 in Global Change Biology
Verified
Journal Article
Open access
MCMarjolijn J. A. Christianen
Marjolijn J. A. Christianen
FSFee O. H. Smulders
Fee O. H. Smulders
JVJan Arie Vonk
Jan Arie Vonk
LBLeontine E. Becking
Leontine E. Becking
TBTjeerd J. Bouma
Tjeerd J. Bouma
EBElisabeth S. Bakker
Elisabeth S. Bakker
Large grazers (megaherbivores) have a profound impact on ecosystem functioning. However, how ecosystem multifunctionality is affected by changes in megaherbivore populations remains poorly understood. Understanding the total impact on ecosystem multifunctionality requires an integrative ecosystem approach, which is especially challenging to obtain in marine systems. We assessed the effects of experimentally simulated grazing intensity scenarios on ecosystem functions and multifunctionality in a tropical Caribbean seagrass ecosystem. As a model, we selected a key marine megaherbivore, the green turtle, whose ecological role is rapidly unfolding in numerous foraging areas where populations are recovering through conservation after centuries of decline, with an increase in recorded overgrazing episodes. To quantify the effects, we employed a novel integrated index of seagrass ecosystem multifunctionality based upon multiple, well‐recognized measures of seagrass ecosystem functions that reflect ecosystem services. Experiments revealed that intermediate turtle grazing resulted in the highest rates of nutrient cycling and carbon storage, while sediment stabilization, decomposition rates, epifauna richness, and fish biomass are highest in the absence of turtle grazing. In contrast, intense grazing resulted in disproportionally large effects on ecosystem functions and a collapse of multifunctionality. These results imply that (i) the return of a megaherbivore can exert strong effects on coastal ecosystem functions and multifunctionality, (ii) conservation efforts that are skewed toward megaherbivores, but ignore their key drivers like predators or habitat, will likely result in overgrazing‐induced loss of multifunctionality, and (iii) the multifunctionality index shows great potential as a quantitative tool to assess ecosystem performance. Considerable and rapid alterations in megaherbivore abundance (both through extinction and conservation) cause an imbalance in ecosystem functioning and substantially alter or even compromise ecosystem services that help to negate global change effects. An integrative ecosystem approach in environmental management is urgently required to protect and enhance ecosystem multifunctionality.

25 March 2021 in Limnology and Oceanography: Methods
Verified
Journal Article
Open access
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EIEduardo Infantes
Eduardo Infantes
JSJaco de Smit
Jaco de Smit
ETElena Tamarit
Elena Tamarit
TBTjeerd J. Bouma
Tjeerd J. Bouma
Wave flume facilities that are primarily designed for engineering studies are often complex and expensive to operate, and hence not ideal for long‐term replicated experiments as commonly used in biology. This study describes a low‐cost small wave flume that can be used for biological purposes using fresh‐ or seawater with or without sediment. The wave flume can be used as a mesocosm to study interactions between wave hydrodynamics and benthic organisms in aquatic ecosystems. The low‐costs wave maker (< 2000 USD) allows for experimental setups which can be easily replicated and used for longer term studies; hence the term wave mesocosm. Waves were generated with a pneumatic piston and wave heights ranged between 3 and 6 cm. Maximum orbital flow velocities ranged between 10 and 50 cm s−1representing shallow coastal areas with a short fetch. The system can generate both regular waves (i.e., the wave period and orbital velocity remains constant), using a wave absorber, and irregular waves (i.e., varying wave period and orbital velocity) using a fast push and slow pull motion of the wave paddle. This wave mesocosm system is particularly useful in biogeomorphology to quantify interactions between organisms, sediment, and hydrodynamics and for aquatic ecologist aiming to simulate realistic bed shear stress where short‐ and long‐term experiments (weeks–months) can be replicated.

23 August 2021 in Limnology and Oceanography
Verified
Journal Article
Open access
PDF file
HCHaobing Cao
Haobing Cao
ZZZhenchang Zhu
Zhenchang Zhu
PHPeter M.J. Herman
Peter M.J. Herman
STStijn Temmerman
Stijn Temmerman
JSJaco de Smit
Jaco de Smit
TBTjeerd J. Bouma
Tjeerd J. Bouma
Despite the well‐recognized importance of plant traits for biogeomorphic development of landscapes, our understanding remains limited of how species‐specific plant traits respond to and serve as drivers for the sedimentary dynamics within a biogeomorphic landscape. By manipulating a series of laboratory experiments, using mesocosms and a flume, we examined how species‐specific differences in expansion strategy, i.e., clonal step‐length of laterally expanding tillers, both respond to sediment type and drive cliff formation and persistence. We compared three marsh species, with contrasting clonal expansion traits, that are dominant in many estuaries worldwide: Spartina anglica, Scirpus maritimus, and Phragmites australis. Our results revealed that S. anglica tussocks tend to have high shoot density due to a short clonal expansion step‐length, whereas S. maritimus tussocks were much more diffuse and tend to have a longer clonal expansion step‐length. P. australis showed intermediate traits. Clonal expansion step‐length did show within‐species variation in response to sediment texture, but species‐specific differences remained the most important. Species with smaller clonal step‐lengths, such as S. anglica in this study, are more likely to induce cliffs at the marsh edge by driving formation of larger cliff heights and also having lower capacity to grow out from cliffs. Our findings thus illustrate how dynamic landscape features like cliffs at marsh edges depend on the clonal expansion traits of the dominant species. This enhances current understanding of the formation and development of marsh edges, and is instructive for understanding the role of species‐specific traits in driving distinct biogeomorphic landscape dynamics.