We investigated the presence and diversity of cetaceans in the Mediterranean Sea, analysing the data collected by 32 different research units, over a period of 15 years (2004–2018), and shared on the common web-GIS platform named Intercet. We used the encounter rate, the species prevalence, and the Shannon diversity index as parameters for data analysis. The results show that cetacean diversity, in the context of the Mediterranean basin, is generally quite low when compared with the eastern Atlantic, as few species, namely the striped dolphin, the bottlenose dolphin, the fin whale, and the sperm whale, dominate over all the others. However, some areas, such as the Alboran Sea or the north-western Mediterranean Sea, which includes the Pelagos Sanctuary (the Specially Protected Area of Mediterranean Interest located in the northern portion of the western basin), show higher levels of diversity and should be considered hotspots to be preserved. Primary production and seabed profile seem to be the two main drivers influencing the presence and distribution of cetaceans, with the highest levels of diversity observed in areas characterized by high levels of primary production and high bathymetric variability and gradient. This collective work underlines the importance of data sharing to deepen our knowledge on marine fauna at the scale of the whole Mediterranean Sea and encourages greater efforts in the networking process, also to accomplish the requirements of the Marine Strategy Framework Directive, with particular reference to Descriptor 1: biological diversity is maintained.

Collisions with large vessels potentially present a major conservation issue for sperm whales in the Pelagos Sanctuary in the northwestern Mediterranean Sea. The exact numbers and locations of ship strikes remain largely unknown at present. In this study, sightings of sperm whales in summer (June–September) were gathered for the period between 1998 and 2008 from nine French and Italian organisations, together covering an area of more than 68,000km. Working on a regular grid of 0.1° × 0.1° latitude/longitude cells, approximate surface density of the whales was calculated using kriging methods. A database of shipping lanes of ferries and merchant vessels was assembled, and traffic density was mapped (kilometres travelled per cell). The data was overlayed and multiplied, using ArcGis, to create a relative density surface map of sperm whales correlated with the relative density of maritime traffic. Several maps of collision risk were drawn up according to the speed class of the vessels. Of living animals that had been photo-identified, 9% had scars attributed to ship strike. Results show that sperm whales are at high risk from merchant vessels along the French and Italian continental coasts and at risk from conventional ferries on the east side of the islands of Corsica and Sardinia. It was calculated that 74 animals could be in a ship strike risk situation during the summer period in the Pelagos Sanctuary. Based on these results, mitigation measures already in place were reviewed and new measures to reduce ship strike risk are suggested.

The Pelagos Sanctuary hosts eight resident cetacean species. Genetically different from Atlantic populations, their conservation is essential to preserve the whole biodiversity of the Ligurian Sea. The NATURA 2000 network is currently identified as one of the most efficient conservation tools due to its legally binding nature; however, its effectiveness for cetacean preservation is still unclear. The study used data systematically collected within the Pelagos Sanctuary from 2008 to 2021 by the FLT Med Net and the LIFE Conceptu Maris projects to investigate cetaceans distribution, Richness and diversity related to the existing protected areas. Of the 423 hexagons considered, only 21.28% of the study area was covered by French NATURA 2000 sites and 9.22% by Italian sites. French NATURA 2000 sites had the highest coverage of weighted Encounter Rate (ER_w) and biodiversity values. Only three species showed statistically significant differences between the French and Italian protected and non-protected hexagons, and biodiversity showed no significant difference. Only T. truncatus had higher median over Italian protected hexagons. The Pelagos Sanctuary still lacks offshore NATURA 2000 sites, especially in Italian waters. For this reason, areas to amplify the Network aimed at increasing cetacean and biodiversity conservation were highlighted in the results of this study.