Rui Liu

Dr. Rui Liu

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Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 March 2017 in Human Molecular Genetics
Verified
Journal Article
Open access
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VMVikas Mishra
Vikas Mishra
BKBharat K. Karumuri
Bharat K. Karumuri
NHNicole M. Hall
Nicole M. Hall
RLRui Liu
Rui Liu
THTimothy Hutson
Timothy Hutson
EGEdward Glasscock
Edward Glasscock
People with epilepsy have greatly increased probability of premature mortality due to sudden unexpected death in epilepsy (SUDEP). Identifying which patients are most at risk of SUDEP is hindered by a complex genetic etiology, incomplete understanding of the underlying pathophysiology and lack of prognostic biomarkers. Here we evaluated heterozygous Scn2a gene deletion (Scn2a+/−) as a protective genetic modifier in the Kcna1 knockout mouse (Kcna1–/–) model of SUDEP, while searching for biomarkers of SUDEP risk embedded in electroencephalography (EEG) and electrocardiography (ECG) recordings. The human epilepsy gene Kcna1 encodes voltage-gated Kv1.1 potassium channels that act to dampen neuronal excitability whereas Scn2a encodes voltage-gated Nav1.2 sodium channels important for action potential initiation and conduction. SUDEP-prone Kcna1–/– mice with partial genetic ablation of Nav1.2 channels (i.e. Scn2a+/–; Kcna1–/–) exhibited a two-fold increase in survival. Classical analysis of EEG and ECG recordings separately showed significantly decreased seizure durations in Scn2a+/–; Kcna1–/– mice compared with Kcna1–/– mice, without substantial modification of cardiac abnormalities. Novel analysis of the EEG and ECG together revealed a significant reduction in EEG–ECG association in Kcna1–/– mice compared with wild types, which was partially restored in Scn2a+/–; Kcna1–/– mice. The degree of EEG–ECG association was also proportional to the survival rate of mice across genotypes. These results show that Scn2a gene deletion acts as protective genetic modifier of SUDEP and suggest measures of brain–heart association as potential indices of SUDEP susceptibility.

11 May 2022 in Communications Biology
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Journal Article
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EPErnest V Pedapati
Ernest V Pedapati
LSLauren M. Schmitt
Lauren M. Schmitt
LELauren E. Ethridge
Lauren E. Ethridge
MMMakoto Miyakoshi
Makoto Miyakoshi
JSJohn A. Sweeney
John A. Sweeney
CECraig A. Erickson
Craig A. Erickson
Fragile X Syndrome (FXS) is a monogenetic form of intellectual disability and autism in which well-established knockout (KO) animal models point to neuronal hyperexcitability and abnormal gamma-frequency physiology as a basis for key disorder features. Translating these findings into patients may identify tractable treatment targets. Using source modeling of resting-state electroencephalography data, we report findings in FXS, including 1) increases in localized gamma activity, 2) pervasive changes of theta/alpha activity, indicative of disrupted thalamocortical modulation coupled with elevated gamma power, 3) stepwise moderation of low and high-frequency abnormalities based on female sex, and 4) relationship of this physiology to intellectual disability and neuropsychiatric symptoms. Our observations extend findings inFmr1−/−KO mice to patients with FXS and raise a key role for disrupted thalamocortical modulation in local hyperexcitability. This systems-level mechanism has received limited preclinical attention but has implications for understanding fundamental disease mechanisms.

31 March 2021 in Journal of Psychiatric Research
Verified
Journal Article
Closed access
ESElizabeth Smith
Elizabeth Smith
EPErnest V Pedapati
Ernest V Pedapati
RLRui Liu
Rui Liu
LSLauren Schmitt
Lauren Schmitt
KDKelli C. Dominick
Kelli C. Dominick
CECraig A. Erickson
Craig A. Erickson

11 December 2018 in IEEE Transactions on Neural Systems and Rehabilitation Engineering
Verified
Journal Article
Closed access
JAJoshua A. Adkinson
Joshua A. Adkinson
BKBharat Karumuri
Bharat Karumuri
THTimothy N. Hutson
Timothy N. Hutson
RLRui Liu
Rui Liu
OAOmar Alamoudi
Omar Alamoudi
Leonidas IasemidisLeonidas Iasemidis
Leonidas Iasemidis
Accurate epileptogenic focus localization is required prior to surgical resection of brain tissue for treatment of patients with antiepileptic drug resistant (intractable) epilepsy. This clinical need is only partially fulfilled through a subjective, and at times inconclusive, evaluation of the recorded electroence-phalogram (EEG) at seizures’ onset (the so-called gold standard for focus localization in epilepsy). We herein present a novel method of multivariate analysis of the EEG that appears to be very promising for an objective and robust localization of the epileptogenic focus at seizures’ onset. Using the measure of Generalized Partial Directed Coherence (GPDC), combined with surrogate data analysis, we first estimated from multichannel intracranial EEG the statistically significant causal interactions between brain regions at the onset of 92 clinical seizures from 9 patients with temporal lobe intractable epilepsy. From the networks that were formed based on the thus derived interactions, a set of centrality metrics was estimated per network node (brain site). Brain sites located anatomically within the epileptogenic focus were shown to be associated with greater inward centrality values than non-focal brain regions at high frequencies (.. band), and particular inward centrality metrics accurately localized the focus in all 9 patients. In addition to focus localization from seizure (ictal) onset, the developed novel framework for analysis of EEG could be employed to identify the changes of the focal network over time, peri-ictally and interictally, and thus shed light onto the dynamics of ictogenesis, which could then have a significant impact on automated prediction and closed-loop control of seizures by neuromodulation.

19 July 2023 in Biomarkers in Neuropsychiatry
Verified
Journal Article
Open access
RLRui Liu
Rui Liu
EPErnest V. Pedapati
Ernest V. Pedapati
LSLauren M. Schmitt
Lauren M. Schmitt
RSRebecca C. Shaffer
Rebecca C. Shaffer
ESElizabeth G. Smith
Elizabeth G. Smith
CECraig A. Erickson
Craig A. Erickson
Fragile X Syndrome (FXS) is the leading monogenic cause of intellectual disability and autism spectrum disorder. Currently, there are no established biomarkers for predicting and monitoring drug effects in FXS, and no approved therapies are available. Previous studies have shown electrophysiological changes in the brain using electroencephalography (EEG) in individuals with FXS and animal models. These changes may be influenced by drug therapies. In this study, we aimed to assess the reliability of resting-state EEG measures in individuals with FXS, which could potentially serve as a biomarker for drug discovery. We collected resting-state EEG data from 35 individuals with FXS participating in placebo-controlled clinical trials (23 males, 12 females; visit age mean+/−std 25.6 +/−8.3). The data were analyzed for various spectral features using intraclass correlation analysis to evaluate test-retest reliability. The intervals between EEG recordings ranged from same-day measurements to up to six weeks apart. Our results showed high reliability for most spectral features, with same-day reliability exceeding 0.8. Features of interest demonstrated ICC values of 0.60 or above at longer intervals. Among the features, alpha band relative power exhibited the highest reliability. These findings indicate that resting-state EEG can provide consistent and reproducible measures of brain activity in individuals with FXS. This supports the potential use of EEG as an objective biomarker for evaluating the effects of new drugs in FXS. The reliable measurements obtained from power spectrum-based resting-state EEG make it a promising tool for assessing the impact of small molecule drugs in FXS.

31 May 2018 in Entropy
Verified
Journal Article
Open access
PDF file
RLRui Liu
Rui Liu
BKBharat Karumuri
Bharat Karumuri
JAJoshua Adkinson
Joshua Adkinson
THTimothy Hutson
Timothy Hutson
IVIoannis Vlachos
Ioannis Vlachos
Leonidas IasemidisLeonidas Iasemidis
Leonidas Iasemidis
Quantification of the complexity of signals recorded concurrently from multivariate systems, such as the brain, plays an important role in the study and characterization of their state and state transitions. Multivariate analysis of the electroencephalographic signals (EEG) over time is conceptually most promising in unveiling the global dynamics of dynamical brain disorders such as epilepsy. We employed a novel methodology to study the global complexity of the epileptic brain en route to seizures. The developed measures of complexity were based on Multivariate Matching Pursuit (MMP) decomposition of signals in terms of time–frequency Gabor functions (atoms) and Shannon entropy. The measures were first validated on simulation data (Lorenz system) and then applied to EEGs from preictal (before seizure onsets) periods, recorded by intracranial electrodes from eight patients with temporal lobe epilepsy and a total of 42 seizures, in search of global trends of complexity before seizures onset. Out of five Gabor measures of complexity we tested, we found that our newly defined measure, the normalized Gabor entropy (NGE), was able to detect statistically significant (p < 0.05) nonlinear trends of the mean global complexity across all patients over 1 h periods prior to seizures’ onset. These trends pointed to a slow decrease of the epileptic brain’s global complexity over time accompanied by an increase of the variance of complexity closer to seizure onsets. These results show that the global complexity of the epileptic brain decreases at least 1 h prior to seizures and imply that the employed methodology and measures could be useful in identifying different brain states, monitoring of seizure susceptibility over time, and potentially in seizure prediction.