Mithu Baidya

Mithu Baidya


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 June 2018 in Nature Structural & Molecular Biology
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ASAndrija Sente
Andrija Sente
RPRaphael Peer
Raphael Peer
ASAshish Srivastava
Ashish Srivastava
MBMithu Baidya
Mithu Baidya
ALArthur M. Lesk
Arthur M. Lesk
TFTilman Flock
Tilman Flock

11 September 2020 in Science Advances
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Journal Article
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HDHemlata Dwivedi-Agnihotri
Hemlata Dwivedi-Agnihotri
MCMadhu Chaturvedi
Madhu Chaturvedi
MBMithu Baidya
Mithu Baidya
TSTomasz Maciej Stepniewski
Tomasz Maciej Stepniewski
SPShubhi Pandey
Shubhi Pandey
ASArun K. Shukla
Arun K. Shukla
Agonist-induced phosphorylation of G protein–coupled receptors (GPCRs) is a key determinant for their interaction with β-arrestins (βarrs) and subsequent functional responses. Therefore, it is important to decipher the contribution and interplay of different receptor phosphorylation sites in governing βarr interaction and functional outcomes. Here, we find that several phosphorylation sites in the human vasopressin receptor (V2R), positioned either individually or in clusters, differentially contribute to βarr recruitment, trafficking, and ERK1/2 activation. Even a single phosphorylation site in V2R, suitably positioned to cross-talk with a key residue in βarrs, has a decisive contribution in βarr recruitment, and its mutation results in strong G-protein bias. Molecular dynamics simulation provides mechanistic insights into the pivotal role of this key phosphorylation site in governing the stability of βarr interaction and regulating the interdomain rotation in βarrs. Our findings uncover important structural aspects to better understand the framework of GPCR-βarr interaction and biased signaling.

1 June 2019 in Journal of Biological Chemistry
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SPShubhi Pandey
Shubhi Pandey
XLXaria X. Li
Xaria X. Li
ASAshish Srivastava
Ashish Srivastava
MBMithu Baidya
Mithu Baidya
PKPunita Kumari
Punita Kumari
ASArun K. Shukla
Arun K. Shukla
The human complement component, C5a, binds two different seven-transmembrane receptors termed C5aR1 and C5aR2. C5aR1 is a prototypical G-protein–coupled receptor that couples to the Gαi subfamily of heterotrimeric G-proteins and β-arrestins (βarrs) following C5a stimulation. Peptide fragments derived from the C terminus of C5a can still interact with the receptor, albeit with lower affinity, and can act as agonists or antagonists. However, whether such fragments might display ligand bias at C5aR1 remains unexplored. Here, we compare C5a and a modified C-terminal fragment of C5a, C5apep, in terms of G-protein coupling, βarr recruitment, endocytosis, and extracellular signal-regulated kinase 1/2 mitogen-activated protein kinase activation at the human C5aR1. We discover that C5apep acts as a full agonist for Gαi coupling as measured by cAMP response and extracellular signal-regulated kinase 1/2 phosphorylation, but it displays partial agonism for βarr recruitment and receptor endocytosis. Interestingly, C5apep exhibits full-agonist efficacy with respect to inhibiting lipopolysaccharide-induced interleukin-6 secretion in human macrophages, but its ability to induce human neutrophil migration is substantially lower compared with C5a, although both these responses are sensitive to pertussis toxin treatment. Taken together, our data reveal that compared with C5a, C5apep exerts partial efficacy for βarr recruitment, receptor trafficking, and neutrophil migration. Our findings therefore uncover functional bias at C5aR1 and also provide a framework that can potentially be extended to chemokine receptors, which also typically interact with chemokines through a biphasic mechanism.

1 July 2020 in Journal of Biological Chemistry
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MBMithu Baidya
Mithu Baidya
PKPunita Kumari
Punita Kumari
HDHemlata Dwivedi-Agnihotri
Hemlata Dwivedi-Agnihotri
SPShubhi Pandey
Shubhi Pandey
BSBadr Sokrat
Badr Sokrat
ASArun K. Shukla
Arun K. Shukla
Agonist stimulation of G-protein–coupled receptors (GPCRs) typically leads to phosphorylation of GPCRs and binding to multifunctional proteins called β-arrestins (βarrs). The GPCR–βarr interaction critically contributes to GPCR desensitization, endocytosis, and downstream signaling, and GPCR–βarr complex formation can be used as a generic readout of GPCR and βarr activation. Although several methods are currently available to monitor GPCR–βarr interactions, additional sensors to visualize them may expand the toolbox and complement existing methods. We have previously described antibody fragments (FABs) that recognize activated βarr1 upon its interaction with the vasopressin V2 receptor C-terminal phosphopeptide (V2Rpp). Here, we demonstrate that these FABs efficiently report the formation of a GPCR–βarr1 complex for a broad set of chimeric GPCRs harboring the V2R C terminus. We adapted these FABs to an intrabody format by converting them to single-chain variable fragments and used them to monitor the localization and trafficking of βarr1 in live cells. We observed that upon agonist simulation of cells expressing chimeric GPCRs, these intrabodies first translocate to the cell surface, followed by trafficking into intracellular vesicles. The translocation pattern of intrabodies mirrored that of βarr1, and the intrabodies co-localized with βarr1 at the cell surface and in intracellular vesicles. Interestingly, we discovered that intrabody sensors can also report βarr1 recruitment and trafficking for several unmodified GPCRs. Our characterization of intrabody sensors for βarr1 recruitment and trafficking expands currently available approaches to visualize GPCR–βarr1 binding, which may help decipher additional aspects of GPCR signaling and regulation.

8 January 2026 in Communications Biology
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SSSwapnil Kumar Singh
Swapnil Kumar Singh
MAMahek Agrawal
Mahek Agrawal
APAmrutansu Pattanayak
Amrutansu Pattanayak
MBMithu Baidya
Mithu Baidya
PKPunita Kumari
Punita Kumari
Membrane proteins constitute ~25–30% of the human proteome, with G protein-coupled receptors (GPCRs) representing the largest family and targets of ~35% of FDA-approved drugs. While cryo-electron microscopy (cryo-EM) has transformed GPCR structural biology, resolving small GPCR complexes, particularly those in the apo and inactive states, remains challenging due to their limited size and conformational flexibility. This limitation is significant, as many therapeutics act by stabilizing inactive GPCR conformations. In this review, we discuss the key obstacles to visualizing apo/inactive GPCRs by cryo-EM, summarize fusion and target-binding strategies that have enabled their structural determination, outline practical considerations for fiducial design, and highlight emerging AI-driven approaches likely to further expand the scope of GPCR structural studies.

29 November 2024 in Biochemistry
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MBMadhurjya Protim Borah
Madhurjya Protim Borah
DTDeepika Trakroo
Deepika Trakroo
NSNeeraj Soni
Neeraj Soni
PKPunita Kumari
Punita Kumari
MBMithu Baidya
Mithu Baidya