Iztok Urbancic

Dr. Iztok Urbancic

Laboratory of Biophysics, Condensed Matter Physics Department, “Jozef Stefan” Institute, Jamova 39, 1000 Ljubljana, Slovenia
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Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 September 2019 in Communications Biology
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JSJan Steinkühler
Jan Steinkühler
Erdinc SezginErdinc Sezgin
Erdinc Sezgin
Iztok UrbancicIztok Urbancic
Iztok Urbancic
CEChristian Eggeling
Christian Eggeling
RDRumiana Dimova
Rumiana Dimova
Regulation of plasma membrane curvature and composition governs essential cellular processes. The material property of bending rigidity describes the energetic cost of membrane deformations and depends on the plasma membrane molecular composition. Because of compositional fluctuations and active processes, it is challenging to measure it in intact cells. Here, we study the plasma membrane using giant plasma membrane vesicles (GPMVs), which largely preserve the plasma membrane lipidome and proteome. We show that the bending rigidity of plasma membranes under varied conditions is correlated to readout from environment-sensitive dyes, which are indicative of membrane order and microviscosity. This correlation holds across different cell lines, upon cholesterol depletion or enrichment of the plasma membrane, and variations in cell density. Thus, polarity- and viscosity-sensitive probes represent a promising indicator of membrane mechanical properties. Additionally, our results allow for identifying synthetic membranes with a few well defined lipids as optimal plasma membrane mimetics.

6 March 2019 in Nature Protocols
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Erdinc SezginErdinc Sezgin
Erdinc Sezgin
Falk SchneiderFalk Schneider
Falk Schneider
SGSilvia Galiani
Silvia Galiani
Iztok UrbancicIztok Urbancic
Iztok Urbancic
DWDominic Waithe
Dominic Waithe
Christian EggelingChristian Eggeling
Christian Eggeling

1 September 2017 in Biophysical Journal
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Journal Article
Open access
Erdinc SezginErdinc Sezgin
Erdinc Sezgin
Falk SchneiderFalk Schneider
Falk Schneider
VZVictoria Zilles
Victoria Zilles
Iztok UrbancicIztok Urbancic
Iztok Urbancic
EGEsther Garcia
Esther Garcia
Christian EggelingChristian Eggeling
Christian Eggeling
The lateral organization of molecules in the cellular plasma membrane plays an important role in cellular signaling. A critical parameter for membrane molecular organization is how the membrane lipids are packed. Polarity-sensitive dyes are powerful tools to characterize such lipid membrane order, employing, for example, confocal and two-photon microscopy. The investigation of potential nanodomains, however, requires the use of superresolution microscopy. Here, we test the performance of the polarity-sensitive membrane dyes Di-4-ANEPPDHQ, Di-4-AN(F)EPPTEA, and NR12S in superresolution stimulated emission depletion microscopy. Measurements on cell-derived membrane vesicles, in the plasma membrane of live cells, and on single virus particles, show the high potential of these dyes for probing nanoscale membrane heterogeneity.

1 March 2010 in Biophysical Journal
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AKAleh Kavalenka
Aleh Kavalenka
Iztok UrbancicIztok Urbancic
Iztok Urbancic
VBValérie Belle
Valérie Belle
SRSabrina Rouger
Sabrina Rouger
SCStéphanie Costanzo
Stéphanie Costanzo
JSJanez Strancar
Janez Strancar

23 February 2018 in Nature Immunology
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ASAna Mafalda Santos
Ana Mafalda Santos
APAleks Ponjavic
Aleks Ponjavic
MFMarco Fritzsche
Marco Fritzsche
RFRicardo A. Fernandes
Ricardo A. Fernandes
JSJorge Bernardino de la Serna
Jorge Bernardino de la Serna
SLSteven F. Lee
Steven F. Lee

Verified
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MHMarkéta Havrdová
Markéta Havrdová
Iztok UrbancicIztok Urbancic
Iztok Urbancic
KTKaterina Tomankova
Katerina Tomankova
LMLukáš Malina
Lukáš Malina
JŠJanez Štrancar
Janez Štrancar
ABAthanasios Bourlinos
Athanasios Bourlinos
It is important to understand the nanomaterials intracellular trafficking and distribution and investigate their targeting into the nuclear area in the living cells. In our previous study, we firstly observed penetration of nonmodified positively charged carbon dots decorated with quaternary ammonium groups (QCDs) into the nucleus of mouse NIH/3T3 fibroblasts. Thus, in this work, we focused on deeper study of QCDs distribution inside two healthy mouse NIH/3T3 and L929 cell lines by fluorescence microspectroscopy and performed a comprehensive cytotoxic and DNA damage measurements. Real-time penetration of QCDs across the plasma cell membrane was recorded, concentration dependent uptake was determined and endocytic pathways were characterized. We found out that the QCDs concentration of 200 µg/mL is close to saturation and subsequently, NIH/3T3 had a different cell cycle profile, however, no significant changes in viability (not even in the case with QCDs in the nuclei) and DNA damage. In the case of L929, the presence of QCDs in the nucleus evoked a cellular death. Intranuclear environment of NIH/3T3 cells affected fluorescent properties of QCDs and evoked fluorescence blue shifts. Studying the intracellular interactions with CDs is essential for development of future applications such as DNA sensing, because CDs as DNA probes have not yet been developed.