Ramesh Namdeo Pudake

Dr. Ramesh Namdeo Pudake

Amity University, Noida, India
orcid

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
7 April 2011 in BMC Genomics
Verified
Journal Article
Open access
PDF file
HXHongyan Xing
Hongyan Xing
Ramesh Namdeo PudakeRamesh Namdeo Pudake
Ramesh Namdeo Pudake
Ganggang GuoGanggang Guo
Ganggang Guo
GXGuofang Xing
Guofang Xing
ZHZhaorong Hu
Zhaorong Hu
ZNZhongfu Ni
Zhongfu Ni
Background: Auxin signaling is vital for plant growth and development, and plays important role in apical dominance, tropic response, lateral root formation, vascular differentiation, embryo patterning and shoot elongation. Auxin Response Factors (ARFs) are the transcription factors that regulate the expression of auxin responsive genes. The ARF genes are represented by a large multigene family in plants. The first draft of full maize genome assembly has recently been released, however, to our knowledge, the ARF gene family from maize (ZmARF genes) has not been characterized in detail. Results: In this study, 31 maize (Zea mays L.) genes that encode ARF proteins were identified in maize genome. It was shown that maize ARF genes fall into related sister pairs and chromosomal mapping revealed that duplication of ZmARFs was associated with the chromosomal block duplications. As expected, duplication of some ZmARFs showed a conserved intron/exon structure, whereas some others were more divergent, suggesting the possibility of functional diversification for these genes. Out of these 31 ZmARF genes, 14 possess auxin-responsive element in their promoter region, among which 7 appear to show small or negligible response to exogenous auxin. The 18 ZmARF genes were predicted to be the potential targets of small RNAs. Transgenic analysis revealed that increased miR167 level could cause degradation of transcripts of six potential targets (ZmARF3, 9, 16, 18, 22 and 30). The expressions of maize ARF genes are responsive to exogenous auxin treatment. Dynamic expression patterns of ZmARF genes were observed in different stages of embryo development. Conclusions: Maize ARF gene family is expanded (31 genes) as compared to Arabidopsis (23 genes) and rice (25 genes). The expression of these genes in maize is regulated by auxin and small RNAs. Dynamic expression patterns of ZmARF genes in embryo at different stages were detected which suggest that maize ARF genes may be involved in seed development and germination.

31 October 2017 in Plant Physiology
Verified
Journal Article
Open access
PDF file
NZNing Zhang
Ning Zhang
YYYujing Yin
Yujing Yin
XLXinye Liu
Xinye Liu
STShaoming Tong
Shaoming Tong
JXJiewen Xing
Jiewen Xing
YYYingyin Yao
Yingyin Yao
TaSAP5 is a kind of A20/AN1 ubiquitin E3 ligase and could enhance drought tolerance of wheat and Arabidopsis by promoting the degradation of DREB2A INTERACTING

21 September 2023 in Agriculture
Verified
Journal Article
Open access
PDF file
MRManjit Kumar Ray
Manjit Kumar Ray
Awdhesh Kumar MishraAwdhesh Kumar Mishra
Awdhesh Kumar Mishra
Yugal Kishore MohantaYugal Kishore Mohanta
Yugal Kishore Mohanta
SMSaurov Mahanta
Saurov Mahanta
Ishani ChakrabarttyIshani Chakrabartty
Ishani Chakrabartty
Ramesh Namdeo PudakeRamesh Namdeo Pudake
Ramesh Namdeo Pudake
It is crucial to increase agricultural yields to fulfill the rising demand for food and the security it provides for a growing population. To protect human food supplies and agricultural outputs, disease management is essential. Plant infections are a silent enemy of economic crop production and cross-border commerce of agricultural goods, inflicting roughly 20–30% losses a year. If infections are accurately and rapidly detected and identified, this can be minimized, and specialized treatment can be given. The current methods of preventing plant diseases are utterly dependent on agrochemicals, which have adverse effects on the ecosystem. By improving their solubility, lengthening their shelf life, and lowering their toxicity, nanotechnology can help reduce the harmful effects of pesticides and fungicides in a sustainable and environmentally responsible way. Engineered nanoparticles can be used to control plant diseases either by using the nanoparticle itself or as a carrier for fungicides and antibiotics. Regardless of the many prospective benefits of using nanoparticles, few nanoparticle-based products have been made commercially available for use in more widespread applications. For rapid and accurate spotting of plant diseases, the combination of nanotechnology systems with molecular diagnostics acts as an alternative where the detection may be taken in on a portable miniaturized appliance. By minimizing the application of chemicals and adopting quick identification of infections, nanotechnology might sustainably minimize many issues in disease control. This review outlines the tools and techniques used in the diagnosis of plant diseases and their management and explains how nanotechnology works, along with the current tools and their prospects for the future of plant protection.

27 September 2016 in PLOS Pathogens
Verified
Journal Article
Open access
PDF file
MQMingsheng Qi
Mingsheng Qi
TLTobias I Link
Tobias I Link
MMManuel Müller
Manuel Müller
DHDaniela Hirschburger
Daniela Hirschburger
Ramesh Namdeo PudakeRamesh Namdeo Pudake
Ramesh Namdeo Pudake
SWSteve Whitham
Steve Whitham
The Asian soybean rust fungus, Phakopsora pachyrhizi, is an obligate biotrophic pathogen causing severe soybean disease epidemics. Molecular mechanisms by which P. pachyrhizi and other rust fungi interact with their host plants are poorly understood. The genomes of all rust fungi encode many small, secreted cysteine-rich proteins (SSCRP). While these proteins are thought to function within the host, their roles are completely unknown. Here, we present the characterization of P. pachyrhizi effector candidate 23 (PpEC23), a SSCRP that we show to suppress plant immunity. Furthermore, we show that PpEC23 interacts with soybean transcription factor GmSPL12l and that soybean plants in which GmSPL12l is silenced have constitutively active immunity, thereby identifying GmSPL12l as a negative regulator of soybean defenses. Collectively, our data present evidence for a virulence function of a rust SSCRP and suggest that PpEC23 is able to suppress soybean immune responses and physically interact with soybean transcription factor GmSPL12l, a negative immune regulator. Asian soybean rust is a disease caused by the rust fungus, Phakopsora pachyrhizi, which was first described in Japan in 1902 and eventually reached North and South America in the early 2000s. Like other rust fungi, P. pachyrhizi, is capable of causing disease epidemics that severely reduce crop yields. Rust fungi require living host tissue in order to complete their life cycles, and thus, we expect that they produce and secrete effector proteins that are transferred into plant cells to interfere with immune responses. Small proteins that are rich in the amino acid cysteine and predicted to be secreted have been proposed to be likely candidates for effector proteins. Here, we report that a secreted, small cysteine-rich protein from P. pachyrhizi suppresses plant immunity, and furthermore, it interacts with a soybean transcription factor protein. Interestingly, silencing of this transcription factor results in plants that have increased expression of defense marker genes and enhanced disease resistance, which demonstrates that it is a negative regulator of soybean immune responses. Our work shows that, indeed, a small cysteine-rich protein from a rust fungus can suppress plant immunity, and furthermore, it identifies a new function for SQUAMOSA PROMOTER BINDING-LIKE (SPL) transcription factors as components of the defense regulatory networks that holds immune responses in check.


29 August 2012 in Euphytica
Verified
Journal Article
Closed access
PDF file
MKMaya Kumari
Maya Kumari
Ramesh Namdeo PudakeRamesh Namdeo Pudake
Ramesh Namdeo Pudake
VSV. P. Singh
V. P. Singh
AJArun K. Joshi
Arun K. Joshi