Erkin Seker

Prof. Erkin Seker

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 May 2020 in Journal of Neuroinflammation
Verified
Journal Article
Open access
PDF file
NGNoah Goshi
Noah Goshi
RMRhianna K. Morgan
Rhianna K. Morgan
PLPamela J. Lein
Pamela J. Lein
ESErkin Seker
Erkin Seker
Background: Interactions between neurons, astrocytes, and microglia critically influence neuroinflammatory responses to insult in the central nervous system. In vitro astrocyte and microglia cultures are powerful tools to study specific molecular pathways involved in neuroinflammation; however, in order to better understand the influence of cellular crosstalk on neuroinflammation, new multicellular culture models are required. Methods: Primary cortical cells taken from neonatal rats were cultured in a serum-free “tri-culture” medium formulated to support neurons, astrocytes, and microglia, or a “co-culture” medium formulated to support only neurons and astrocytes. Caspase 3/7 activity and morphological changes were used to quantify the response of the two culture types to different neuroinflammatory stimuli mimicking sterile bacterial infection (lipopolysaccharide (LPS) exposure), mechanical injury (scratch), and seizure activity (glutamate-induced excitotoxicity). The secreted cytokine profile of control and LPS-exposed co- and tri-cultures were also compared. Results: The tri-culture maintained a physiologically relevant representation of neurons, astrocytes, and microglia for 14 days in vitro, while the co-cultures maintained a similar population of neurons and astrocytes, but lacked microglia. The continuous presence of microglia did not negatively impact the overall health of the neurons in the tri-culture, which showed reduced caspase 3/7 activity and similar neurite outgrowth as the co-cultures, along with an increase in the microglia-secreted neurotrophic factor IGF-1 and a significantly reduced concentration of CX3CL1 in the conditioned media. LPS-exposed tri-cultures showed significant astrocyte hypertrophy, increase in caspase 3/7 activity, and the secretion of a number of pro-inflammatory cytokines (e.g., TNF, IL-1α, IL-1β, and IL-6), none of which were observed in LPS-exposed co-cultures. Following mechanical trauma, the tri-culture showed increased caspase 3/7 activity, as compared to the co-culture, along with increased astrocyte migration towards the source of injury. Finally, the microglia in the tri-culture played a significant neuroprotective role during glutamate-induced excitotoxicity, with significantly reduced neuron loss and astrocyte hypertrophy in the tri-culture. Conclusions: The tri-culture consisting of neurons, astrocytes, and microglia more faithfully mimics in vivo neuroinflammatory responses than standard mono- and co-cultures. This tri-culture can be a useful tool to study neuroinflammation in vitro with improved accuracy in predicting in vivo neuroinflammatory phenomena.

3 December 2009 in Materials
Verified
Journal Article
Open access
PDF file
ESErkin Seker
Erkin Seker
MRMichael L. Reed
Michael L. Reed
MBMatthew R. Begley
Matthew R. Begley
Nanoporous gold (np-Au) has intriguing material properties that offer potential benefits for many applications due to its high specific surface area, well-characterized thiol-gold surface chemistry, high electrical conductivity, and reduced stiffness. The research on np-Au has taken place on various fronts, including advanced microfabrication and characterization techniques to probe unusual nanoscale properties and applications spanning from fuel cells to electrochemical sensors. Here, we provide a review of the recent advances in np-Au research, with special emphasis on microfabrication and characterization techniques. We conclude the paper with a brief outline of challenges to overcome in the study of nanoporous metals.

1 February 2009 in Nature Physics
Verified
Journal Article
Closed access
DLDaniel C. Leslie
Daniel C. Leslie
CEChristopher J. Easley
Christopher J. Easley
ESErkin Seker
Erkin Seker
JKJames M. Karlinsey
James M. Karlinsey
MUMarcel Utz
Marcel Utz
JLJames P. Landers
James P. Landers

23 February 2015 in ACS Applied Materials & Interfaces
Verified
Journal Article
Closed access
CCChristopher A. R. Chapman
Christopher A. R. Chapman
HCHao Chen
Hao Chen
MSMarianna Stamou
Marianna Stamou
JBJuergen Biener
Juergen Biener
MBMonika M. Biener
Monika M. Biener
ESErkin Seker
Erkin Seker

5 March 2010 in Nanotechnology
Verified
Journal Article
Closed access
ESErkin Seker
Erkin Seker
Yevgeny BerdichevskyYevgeny Berdichevsky
Yevgeny Berdichevsky
MBMatthew R Begley
Matthew R Begley
MRMichael L Reed
Michael L Reed
KSKevin J Staley
Kevin J Staley
MYMartin L Yarmush
Martin L Yarmush
Neural electrodes are essential tools for the study of the nervous system and related diseases. Low electrode impedance is a figure of merit for sensitive detection of neural electrical activity and numerous studies have aimed to reduce impedance. Unfortunately, most of these efforts have been tethered by a combination of poor functional coating adhesion, complicated fabrication techniques, and poor fabrication repeatability. We address these issues with a facile method for reliably producing multiple-electrode arrays with low impedance by patterning highly adherent nanoporous gold films using conventional microfabrication techniques. The high surface area-to-volume ratio of self-assembled nanoporous gold results in a more than 25-fold improvement in the electrode-electrolyte impedance, where at 1 kHz, 850 kOmega impedance for conventional Au electrodes is reduced to 30 kOmega for nanoporous gold electrodes. Low impedance provides a superior signal-to-noise ratio for detection of neural activity in noisy environments. We systematically studied the effect of film morphology on electrode impedance and successfully recorded field potentials from rat hippocampal slices. Here, we present our fabrication approach, the relationship between film morphology and impedance, and field potential recordings.

2 December 2013 in Scientific Reports
Verified
Journal Article
Open access
PDF file
MKMehmet Kahraman
Mehmet Kahraman
PDPallavi Daggumati
Pallavi Daggumati
OKOzge Kurtulus
Ozge Kurtulus
ESErkin Seker
Erkin Seker
SWSebastian Wachsmann-Hogiu
Sebastian Wachsmann-Hogiu
We present a novel method to fabricate flexible and tunable plasmonic nanostructures based on combination of soft lithography and nanosphere lithography, and perform a comprehensive structural and optical characterization of these structures. Spherical latex particles are uniformly deposited on glass slides and used as molds for polydimethylsiloxane to obtain nanovoid structures. The diameter and depth of the nanostructures are controlled by the size of the latex particles. These surfaces are coated with a thin Ag layer for fabrication of uniform plasmonic nanostructures. Structural characterization of these surfaces is performed by SEM and AFM. Optical properties of these plasmonic nanostructures are evaluated via UV/Vis absorption spectroscopy, dark field microscopy, and surface–enhanced Raman spectroscopy (SERS). Position of the surface plasmon absorption depends on the diameter and depth of the nanostructures. SERS enhancement factor (measured up to 1.4 × 106) is dependent on the plasmon absorption wavelength and laser wavelength used in these experiments.