Silica nanoparticles (SiNPs) offer an ecofriendly and environmentally safe alternative for plant disease management. However, the mechanisms of SiNPs-induced disease resistance are largely unknown. This research evaluated the application of SiNPs in controlling the postharvest decay of ginger rhizomes inoculated with Fusarium solani. In vitro study showed that SiNP had little inhibitory effect on mycelial growth and spore germination of F. solani and did not significantly change mycelium’s MDA content and SDH activity. In vivo analysis indicated that SiNPs decreased the degree of decay around the wounds and decreased the accumulation of H₂O₂ after long-term pathogenic infection through potentiating the activities of antioxidant enzymes such as SOD, APX, PPO, and CAT. SiNP150 increased the CHI, PAL, and GLU activity at the onset of the experiment. Moreover, SiNP150 treatment increased total phenolics contents by 1.3, 1.5, and 1.2-times after 3, 5, and 7 days of treatment, and increased total flavonoids content throughout the experiment by 9.3%, 62.4%, 26.9%, 12.8%, and 60.8%, respectively. Furthermore, the expression of selected phenylpropanoid pathway-related genes was generally enhanced by SiNPs when subjected to F. solani inoculation. Together, SiNPs can effectively reduce the fungal disease of ginger rhizome through both physical and biochemical defense mechanisms.

Actinidia chinensis ‘Hongyang’, also known as red yangtao (red heart kiwifruit), is a vine fruit tree native to China possessing significant nutritional and economic value. However, information on its genetic diversity and phylogeny is still very limited. The first chloroplast (cp) genome of A. chinensis ‘Hongyang’ cultivated in China was sequenced using de novo technology in this study. A. chinensis ‘Hongyang’ possesses a cp genome that spans 156,267 base pairs (bp), exhibiting an overall GC content of 37.20%. There were 132 genes that were annotated, with 85 of them being protein-coding genes, 39 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. A total of 49 microsatellite sequences (SSRs) were detected, mainly single nucleotide repeats, mostly consisting of A or T base repeats. Compared with 14 other species, the cp genomes of A. chinensis ‘Hongyang’ were biased towards the use of codons containing A/U, and the non-protein coding regions in the A. chinensis ‘Hongyang’ cpDNA showed greater variation than the coding regions. The nucleotide polymorphism analysis (Pi) yielded nine highly variable region hotspots, most in the large single copy (LSC) region. The cp genome boundary analysis revealed a conservative order of gene arrangement in the inverted repeats (IRs) region of the cp genomes of 15 Actinidia plants, with small expansions and contractions of the boundaries. Furthermore, phylogenetic tree indicated that A. chinensis ‘Hongyang’ was the closest relative to A. indochinensis. This research provides a useful basis for future genetic and evolutionary studies of A. chinensis ‘Hongyang’, and enriches the biological information of Actinidia species.

Drought stress (DS) is a primary environmental factor that limits the production of ginger (Zingiber officinale Roscoe). Silica nanoparticles (SiNPs) have been shown to enhance drought resistance in ginger by modulating water relations. However, the specific impact of SiNPs on the antioxidant and glyoxalase system responses to DS remains unclear. To investigate the impact of SiNP100 on photosynthetic and antioxidant metabolism in ginger under DS, four treatments were designed in this study: control (CK), drought stress (DS), silica nanoparticles (SiNP100) application, and the combined treatment of DS and SiNP100 (DS + SiNP100). The results showed that SiNP100 alleviated DS-induced damage by improving photosynthetic parameters, chlorophyll content, and the efficiency of photosystems I and II. DS significantly increased the levels of reactive oxygen species (ROS), malondialdehyde (MDA), and methylglyoxal (MG), thereby inducing oxidative stress. SiNP100 mitigated this effect by reducing ROS accumulation and enhancing the activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT). Furthermore, SiNP100 boosted the ascorbate–glutathione (AsA-GSH) cycle by increasing the activities of key enzymes (APX, DHAR, MDHAR, and GR) and upregulating the expression of ZoDHAR2, ZoAPX1, and ZoGR2. This leads to higher ascorbate and glutathione levels in ginger. SiNP100 also bolstered the glyoxalase system, as evidenced by increased activities of glyoxalase I (Gly I) and glyoxalase II (Gly II), alongside the upregulation of ZoGLY1 expression, thereby promoting methylglyoxal (MG) detoxification. In conclusion, SiNP100 enhances drought tolerance in ginger by reinforcing the antioxidant defense system, AsA-GSH cycle, and methylglyoxal detoxification system, thereby protecting photosynthetic metabolism and promoting growth.

Phosphoenolpyruvate carboxylase (PEPC) is a crucial enzyme in plant photosynthesis and stress responses, yet its gene family remained uncharacterized in Zanthoxylum armatum. This study presents the first genome-wide identification and comprehensive analysis of the PEPC gene family in Z. armatum. A total of 12 ZaPEPC genes were identified and classified into plant-type (PTPC) and bacterial-type (BTPC) subfamilies based on phylogenetic analysis. These genes exhibited conserved protein domains but distinct gene structures, with evidence of gene duplication events contributing to family expansion. Promoter analysis revealed an abundance of stress- and hormone-responsive cis-elements, particularly those related to light, abscisic acid (ABA), and methyl jasmonate (MeJA). Expression profiling demonstrated that ZaPEPC genes display environment-specific expression patterns, with ZaPEPC7 and ZaPEPC11 showing significantly higher expression in high-altitude, high-light environments (Yunnan) compared to other regions (Shandong and Chongqing). Co-expression network analysis further indicated interactions between specific ZaPEPCs and stress-related transcription factors. These findings systematically reveal the molecular characteristics and potential roles of the ZaPEPC gene family in environmental adaptation, providing valuable genetic resources and a theoretical foundation for improving stress tolerance and photosynthetic efficiency in Z. armatum through molecular breeding.

Background/Objectives: The oil grape (Idesia polycarpa), often called the “golden tree”, is an essential woody plant valued for its edible oil. Although its economic significance is recognized, the specifics of its chloroplast genome and evolutionary connections remain unclear. This study sequenced the chloroplast genome of I. polycarpa and performed a comparative analysis of its genome structure, genetic diversity, and phylogenetics using chloroplast data from related species. Methods: In this study, we sequenced and annotated the whole chloroplast genome of I. polycarpa via GISEQ-500 sequencing and de novo assembly. Results: The chloroplast genome of I. polycarpa exhibits a typical tetrad structure, with a length of 155,899 bp and a GC content of 36.78%. It comprises 130 unique genes, including 85 coding genes, 37 tRNAs, and eight rRNAs, showing notable conservation in gene composition and arrangement compared to closely related species. However, the inverted repeat region boundaries are narrower. Phylogenetic analysis showed strong relationships among I. polycarpa, Bennettiodendron brevipes, Poliothyrsis sinensis, Itoa orientalis, and Carrierea calycina within the Salicaceae family. Additionally, positive selection analysis revealed that rpl16, ycf1, rps18, and rpl22 are under significant selective pressure in related species, likely linked to adaptations for photosynthesis and environmental responses. Conclusions: This research provides vital molecular foundations for the conservation, classification, and enhancement of I. polycarpa germplasm resources, advancing the study of adaptive evolutionary mechanisms and broadening the genomic database for I. polycarpa.

Ginger possesses both significant edible and medicinal value. Sprouting of ginger is a critical phase that influences the yield and quality of the crop. While silica nanoparticles (SiNPs) are known to promote the growth of ginger, their impact on sprouting remains unclear. The results show that sprouting 100 mg L⁻¹ SiNPs (SiNP100) significantly improved ginger sprouting rate and respiratory intensity while reducing weight loss. It also elevated fructose, sucrose, and glucose contents, as well as sucrose phosphate synthase (SPS), sucrose synthase (SS), neutral invertase (NI), acid invertase (AI) activities, indicating that SiNP100 is associated with enhanced sprouting by modulating sugar metabolism. Concurrently, starch content decreased and α- and β-amylase activities increased. Hormonal profiling showed that SiNP100 increased auxin (IAA), trans-zeatin (TZR), isoamylalkenyladenin (IP), and gibberellic acid (GA₃) levels, while decreasing abscisic acid (ABA), further supporting its role in promoting sprouting. RNA-seq and RT-qPCR validated that SiNP100 significantly enriched the plant hormone signal transduction and starch and sucrose metabolism pathways, upregulating genes related to sugar transport and metabolism (ZoSweet7, ZoSSIVa, ZoSPS1, and ZoSUS5). Field trials over two consecutive years confirmed that SiNP100 application improved ginger growth, photosynthesis, antioxidant capacity, and ultimately yield and quality. This study demonstrated the potential of SiNPs to improve seed sprouting and promote ginger growth under field conditions.