Norimichi Nomura

Dr. Norimichi Nomura

orcid

Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 October 2020 in Nature Structural & Molecular Biology
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KMKazuaki Matoba
Kazuaki Matoba
TKTetsuya Kotani
Tetsuya Kotani
ATAkihisa Tsutsumi
Akihisa Tsutsumi
TTTakuma Tsuji
Takuma Tsuji
TMTakaharu Mori
Takaharu Mori
NNNobuo N. Noda
Nobuo N. Noda

28 October 2022 in Science
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Journal Article
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MAMuna Al-Habsi
Muna Al-Habsi
KCKenji Chamoto
Kenji Chamoto
KMKen Matsumoto
Ken Matsumoto
NNNorimichi Nomura
Norimichi Nomura
BZBaihao Zhang
Baihao Zhang
THTasuku Honjo
Tasuku Honjo
Spermidine (SPD) delays age-related pathologies in various organisms. SPD supplementation overcame the impaired immunotherapy against tumors in aged mice by increasing mitochondrial function and activating CD8 + T cells. Treatment of naïve CD8 + T cells with SPD acutely enhanced fatty acid oxidation. SPD conjugated to beads bound to the mitochondrial trifunctional protein (MTP). In the MTP complex, synthesized and purified from Escherichia coli , SPD bound to the α and β subunits of MTP with strong affinity and allosterically enhanced their enzymatic activities. T cell–specific deletion of the MTP α subunit abolished enhancement of programmed cell death protein 1 (PD-1) blockade immunotherapy by SPD, indicating that MTP is required for SPD-dependent T cell activation.

30 March 2020 in Nature Communications
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RURie Umeda
Rie Umeda
YSYuhkoh Satouh
Yuhkoh Satouh
MTMizuki Takemoto
Mizuki Takemoto
YNYoshiko Nakada-Nakura
Yoshiko Nakada-Nakura
KLKehong Liu
Kehong Liu
ONOsamu Nureki
Osamu Nureki
Tetraspanins play critical roles in various physiological processes, ranging from cell adhesion to virus infection. The members of the tetraspanin family have four membrane-spanning domains and short and large extracellular loops, and associate with a broad range of other functional proteins to exert cellular functions. Here we report the crystal structure of CD9 and the cryo-electron microscopic structure of CD9 in complex with its single membrane-spanning partner protein, EWI-2. The reversed cone-like molecular shape of CD9 generates membrane curvature in the crystalline lipid layers, which explains the CD9 localization in regions with high membrane curvature and its implications in membrane remodeling. The molecular interaction between CD9 and EWI-2 is mainly mediated through the small residues in the transmembrane region and protein/lipid interactions, whereas the fertilization assay revealed the critical involvement of the LEL region in the sperm-egg fusion, indicating the different dependency of each binding domain for other partner proteins.

30 September 2015 in Nature
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NNNorimichi Nomura
Norimichi Nomura
GVGrégory Verdon
Grégory Verdon
HKHae Joo Kang
Hae Joo Kang
TSTatsuro Shimamura
Tatsuro Shimamura
YNYayoi Nomura
Yayoi Nomura
DDDavid Drew
David Drew
The altered activity of the fructose transporter GLUT5, an isoform of the facilitated-diffusion glucose transporter family, has been linked to disorders such as type 2 diabetes and obesity. GLUT5 is also overexpressed in certain tumour cells, and inhibitors are potential drugs for these conditions. Here we describe the crystal structures of GLUT5 from Rattus norvegicus and Bos taurus in open outward- and open inward-facing conformations, respectively. GLUT5 has a major facilitator superfamily fold like other homologous monosaccharide transporters. On the basis of a comparison of the inward-facing structures of GLUT5 and human GLUT1, a ubiquitous glucose transporter, we show that a single point mutation is enough to switch the substrate-binding preference of GLUT5 from fructose to glucose. A comparison of the substrate-free structures of GLUT5 with occluded substrate-bound structures of Escherichia coli XylE suggests that, in addition to global rocker-switch-like re-orientation of the bundles, local asymmetric rearrangements of carboxy-terminal transmembrane bundle helices TM7 and TM10 underlie a ‘gated-pore’ transport mechanism in such monosaccharide transporters.

5 August 2022 in Nature Communications
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ZZZhikuan Zhang
Zhikuan Zhang
NNNorimichi Nomura
Norimichi Nomura
YMYukiko Muramoto
Yukiko Muramoto
TEToru Ekimoto
Toru Ekimoto
TUTomoko Uemura
Tomoko Uemura
TSToshiyuki Shimizu
Toshiyuki Shimizu
The coronavirus membrane protein (M) is the most abundant viral structural protein and plays a central role in virus assembly and morphogenesis. However, the process of M protein-driven virus assembly are largely unknown. Here, we report the cryo-electron microscopy structure of the SARS-CoV-2 M protein in two different conformations. M protein forms a mushroom-shaped dimer, composed of two transmembrane domain-swapped three-helix bundles and two intravirion domains. M protein further assembles into higher-order oligomers. A highly conserved hinge region is key for conformational changes. The M protein dimer is unexpectedly similar to SARS-CoV-2 ORF3a, a viral ion channel. Moreover, the interaction analyses of M protein with nucleocapsid protein (N) and RNA suggest that the M protein mediates the concerted recruitment of these components through the positively charged intravirion domain. Our data shed light on the M protein-driven virus assembly mechanism and provide a structural basis for therapeutic intervention targeting M protein.

4 February 2019 in Nature Structural & Molecular Biology
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Journal Article
Closed access
KKKanako Terakado Kimura
Kanako Terakado Kimura
HAHidetsugu Asada
Hidetsugu Asada
AIAsuka Inoue
Asuka Inoue
FKFrancois Marie Ngako Kadji
Francois Marie Ngako Kadji
DIDohyun Im
Dohyun Im
TSTatsuro Shimamura
Tatsuro Shimamura