Federated Learning has emerged to cope with raising concerns about privacy breaches in using Machine or Deep Learning models. This new paradigm allows the leverage of deep learning models in a distributed manner, enhancing privacy preservation. However, the server's blindness to local datasets introduces its vulnerability to model poisoning attacks and data heterogeneity, tampering with the global model performance. Numerous works have proposed robust aggregation algorithms and defensive mechanisms, but the approaches are orthogonal to individual attacks or issues. FedCC, the proposed method, provides robust aggregation by comparing the Centered Kernel Alignment of Penultimate Layers Representations. The experiment results on FedCC demonstrate that it mitigates untargeted and targeted model poisoning or backdoor attacks while also being effective in non-Independently and Identically Distributed data environments. By applying FedCC against untargeted attacks, global model accuracy is recovered the most. Against targeted backdoor attacks, FedCC nullified attack confidence while preserving the test accuracy. Most of the experiment results outstand the baseline methods.