Cold stress is the main factor that reduces rice yield in subtropical areas, especially at the seedling stage. Most of the current studies on cold stress focus the responses of rice shoots to cold stress. Limited studies are available on that of rice roots to cold stress. This study aimed to illustrate the biochemical responses of rice root under cold treatment, and subject to the establishment of cold stress-related biochemical traits for rice breeding or cropping-adjustment. Our results showed that the growth of rice seedling diminished under cold stress with difference extents among eight rice cultivars of most productive in Taiwan. Under cold treatments, the tested cultivars with higher growth rate had a higher level of hydrogen peroxide (H2O2) in the shoots but had a lower level in the roots. In contrast, the tested cultivates with low growth rate had higher levels of H2O2 in the roots but a lower level in the shoots. Meanwhile, higher MDA contents and higher cell-damage related electrolyte leakage were also found in the roots not in the shoots, suggesting that cold stress might induce oxidative stress in the roots, not in the shoots. Furthermore, the activity analysis of four antioxidant enzymes, namely superoxide dismutase (SOD), catalase (CAT), ascorbic peroxidase (APX), and glutathione reductase (GR), revealed that cold stress could increase SOD and CAT activities in the roots. In summary, low H2O2 and low MDA contents along with lower SOD and CAT activities in rice root could be the biochemical traits of cold responses in rice seedlings. The results are hoping to have a contribution to the rice breeding or cropping-adjustment on cold tolerance.

Genome-editing techniques such as CRISPR/Cas9 have been widely used in crop functional genomics and improvement. To efficiently deliver the guide RNA and Cas9, most studies still rely on Agrobacterium-mediated transformation, which involves a selection marker gene. However, several limiting factors may impede the efficiency of screening transgene-free genome-edited plants, including the time needed to produce each life cycle, the response to selection reagents, and the labor costs of PCR-based genotyping. To overcome these disadvantages, we developed a simple and high-throughput method based on visual detection of antibiotics-derived H₂O₂ to verify transgene-free genome-edited plants. In transgenic rice containing hygromycin phosphotransferase (HPT), H₂O₂ content did not change in the presence of hygromycin B (HyB). In contrast, in transgenic-free rice plants with 10-h HyB treatment, levels of H₂O₂ and malondialdehyde, indicators of oxidative stress, were elevated. Detection of H₂O₂ by 3,3′-diaminobenzidine (DAB) staining suggested that H₂O₂ could be a marker to efficiently distinguish transgenic and non-transgenic plants. Analysis of 24 segregating progenies of an HPT-containing rice plant by RT-PCR and DAB staining verified that DAB staining is a feasible method for detecting transformants and non-transformants. Transgene-free genome-edited plants were faithfully validated by both PCR and the H₂O₂-based method. Moreover, HyB induced overproduction of H₂O₂ in leaves of Arabidopsis, maize, tobacco, and tomato, which suggests the potential application of the DAB method for detecting transgenic events containing HPT in a wide range of plant species. Thus, visual detection of DAB provides a simple, cheap, and reliable way to efficiently identify transgene-free genome-edited and HPT-containing transgenic rice.

Integrating solar modules into agricultural production constitutes a novel type of agricultural industry. We evaluated the effect of setting opaque plastic solar modules on greenhouse roofs on the crop growth inside greenhouse. The opaque plastic agricultural films simulating the material of solar modules and the greenhouse roofs covered with these films were used, and the yield and nitrate content of pak choi ( Brassica chinensis ‘Bekamaru’) and rape ( Brassica napus ‘Dragon’) under these films were measured. The results indicated that the yield of pak choi did not change considerably by a simulated photovoltaic (SPV) roof with a shading rate of 38% compared with an uncovered plastic (PL) roof. However, during the first and second planting periods, the yield of rape under the PL roof substantially exceeded that under the SPV roof by 31% and 34%, respectively, indicating that the effect of shading on the yield of rape was greater than that on the yield of pak choi. In addition, the appearance of pak choi and rape also changed under the SPV roof, such as fewer leaves, lower chlorophyll content, and larger specific leaf areas. Nevertheless, the nitrate content of crops grown under the SPV roof exceeded that of crops grown under the PL roof. In conclusion, based on the expression of yield and growth of crops, pak choi is suitable for cultivation in greenhouses that are equipped with photovoltaic systems. However, to prevent plants from accumulating excessive nitrate, attention must be focused on the amount and frequency of nitrogen fertilizers application.

The continued emergence of weedy rice (Oryza sativa L.) in Taiwan poses serious challenges to seed purity and commercial rice cultivation, particularly under transplanting systems. These off-type individuals, often marked by a red pericarp, reduce varietal integrity and complicate seed propagation. This study evaluated the morphological variation among 117 Taiwan weedy rice (TWR) accessions and 55 control cultivars, which include 24 temperate japonica cultivars (TEJ), 24 indica cultivars, and seven U.S. weedy rice (UWR) types. Principal component analysis (PCA) showed that TWR shares vegetative traits with modern cultivars but exhibits grain morphology resembling indica landraces—indicating weak artificial selection pressure on grain traits during nursery propagation. TWR was also found to possess a suite of adaptive weedy traits, including semi-dwarfism, delayed heading, high shattering, and superior seed storability, facilitating its persistence in field conditions. These findings provide critical insights for integrated weed management and cultivar purity strategies, emphasizing the importance of certified seed use, stringent field hygiene, and disruption of weedy rice reproductive cycles.

Weedy rice (Oryza sativa L.) presents a formidable challenge in global paddy cultivation due to its morphological similarity to cultivated rice, making its eradication difficult. To address this, an integrated weed management system (IWMS) was developed and collected across various regions in Kaohsiung, Taiwan, from 2018 to 2020. This study evaluated the efficacy of the IWMS in controlling the spread of weedy rice through systematic applications in three distinct agricultural zones: Meinong Contractual (MC), Meinong Public Stock (MP), and Shanlin Public Stock (SP). The data reveal a consistent decline in weedy rice invasion with sustained implementation of the IWMS, alongside improvements in seed purity and corresponding grain quality. These enhancements not only mitigate the adverse effects on seed purity but also elevate grain quality, thereby curtailing yield losses and bolstering economic returns. Further analysis indicates that the patterns of weedy rice invasion correlate strongly with geographical and agronomic variables, such as the source of seedlings, land preparation techniques, field management, and the sharing of agricultural implements. Consequently, raising farmer awareness and providing specialized training on management strategies are crucial for effective prevention of weedy rice.