To address the key challenges in GB-RAR monitoring of super-tall buildings—namely, complex noise interference (transient pulse disturbances coupled with high-frequency random fluctuations), the difficulty of distinguishing normal wind-induced vibrations from hazardous deformations, and the propensity of single-algorithm prediction models to converge prematurely—this paper proposes an integrated monitoring data processing workflow that combines status assessment and deformation early warning, using Wuhan Greenland Center as a case study. A denoising method combining Median Absolute Deviation outlier removal and Savitzky–Golay filtering was designed for preprocessing, quantitatively validated through signal-to-noise ratio analysis. Based on filtered data, a spatio-temporal trajectory model was established to visualize and evaluate building movement. Furthermore, a GB-RAR-oriented residual-driven warning framework was developed by coupling a PSO-GA-BP deformation prediction model with adaptive sliding-window thresholding and finite-state warning decisions. Simulation results demonstrate that the PSO-GA-BP model outperforms other neural network models in prediction accuracy, and the derived early warning system exhibits strong feasibility and sensitivity. This workflow proves suitable for GB-RAR deformation monitoring of super-tall buildings, offering valuable reference for future research.