Coal mining can cause groundwater pollution, and microorganism may reflect/affect its hydrochemical characteristics, yet little is known about the microorganism’s distribution characteristics and its influence on the formation and evolution of mine water quality in underground coal mines. Here, we investigated the hydrochemical characteristics and microbial communities of six typical zones in a typical North China coalfield. The results showed that hydrochemical compositions and microbial communities of the water samples displayed apparent zone-specific patterns. The microbial community diversity of the six zones followed the order of surface waters > coal roadways > water sumps ≈ rock roadways ≈ goafs > groundwater aquifers. The microbial communities corresponded to the redox sensitive indices’ levels. Coal roadways and goafs were the critical zones of groundwater pollution prevention and control. During tunneling in the panel, pyrite was oxidized by sulfur-oxidizing bacteria leading to SO₄²⁻ increase. With the closure of the panel and formation of the goaf, SO₄²⁻ increased rapidly for a short period. However, with the time since goaf closure, sulfate-reducing bacteria (e.g., c_Thermodesulfovibrionia, Desulfobacterium_catecholicum, etc.) proportion increased significantly, leading to SO₄²⁻ concentration’s decrease by 42% over 12 years, indicating the long-term closed goafs had a certain self-purification ability. These findings would benefit mine water pollution prevention and control by district.

For deep underground coal mining ecosystems, research on microbial communities and geochemical characteristics of sediments in different functional zones is lacking, resulting in the knowledge of zone-level mine water pollution prevention and control being narrow. In this study, we surveyed the geochemical distinctions and microbial communities of five typical functional zones in a representative North China coalfield, Xinjulong coal mine. The data indicated that the geochemical compounds and microbial communities of sediments showed distinguishing features in each zone. The microbial community richness and diversity were ranked as follows: surface water > rock roadways > sumps > coal roadways ≥ goafs. Canonical Correlation Analysis (CCA), Spearman correlation and co-occurrence network analysis demonstrated that microbial communities were sensitive and closely related to hydrochemical processes. The microbial community distribution in the underground mine was closely related not only to nutrient elements (i.e., C, S, P and N), but also to redox-sensitive substances (i.e., Fe and As). When it comes to mine water pollution prevention and control, the central zones are goafs. With the increase in goaf closure time, total nitrogen (TN), total organic carbon (TOC) and total sulfur (TS) decreased, but As, Fe and total phosphorus (TP) gradually increased, and the characteristic pollutant SO₄²⁻ concentration in water samples decreased. Additionally, the sulfate-reducing bacteria (SRB) had relatively higher proportions in goafs, suggesting goafs were able to purify themselves. In practical engineering, in situ nitrogen injection technology used to expel oxygen and create an anaerobic environment can be implemented to enhance SRB reducing sulfate in goafs. Meanwhile, because coal mine pollution discharge generally only discharges mine water and leaves sediment underground, the pollutants can be transferred to the sediment by strengthening the relevant reactions including the heavy metal solidification and stabilization function of bacteria.

The proportion of neutral and weakly alkaline high-sulfate mine water in China is over 50%, resulting in the problem of high treatment costs. Low-cost, sustainable, and non-secondary pollution remediation technologies for in situ application in underground coal mines have rarely been reported. Here, the mixed packed and layered packed SRB-PRB (sulfate-reducing bacteria-permeable reactive barrier) column experiments at a flow speed of 300 mL/d using low-cost corncob as a carbon source were conducted to simulate sulfate in situ remediation in goafs. The column experiments utilized the simulated weakly alkaline mine water, with an initial sulfate concentration of 1027.45 mg/L. The results showed that during the 40 d operation, the SO₄²⁻ removal kinetics included three stages: rapid reduction (0–6 d), stable reduction (6–16 d), and reduction attenuation (16–40 d). Corncob could provide a relatively long-term carbon source supply, with the maximum average removal efficiency of 65.5% for the mixed packed column and 56.6% for the layered packed column. A large number of complex organic-degrading bacteria were detected in both the effluent water samples and the solid packed media, while SRB became dominant only in the solid packed media. However, the low-abundance SRB could still maintain a high-efficiency SO₄²⁻ reduction, due to the supply of readily utilizable carbon sources provided by hydrolytic and fermentative bacteria. This indicated that the synergistic effect between SRB and these organic matter-degrading bacteria was the critical limiting factor for SO₄²⁻ removal. The microscopic characterizations of SEM-EDS (scanning electron microscopy and energy-dispersive spectroscopy) and FTIR (Fourier transform infrared spectroscopy) confirmed the damage of functional groups in corncobs and the generation of SO₄²⁻ removal products (i.e., FeS). The engineering application schemes of the SRB-PRB under both in-production and abandoned mining scenarios were proposed. Additionally, the material cost estimate results showed that the SRB-PRB could achieve in situ low-cost remediation (0.2–1.55 USD/m³) of the characteristic pollutant SO₄²⁻. These findings would benefit the engineering application of in situ microbial remediation technology for high-sulfate mine water.

Elucidating the microbial–hydrochemical interactions in distinct functional zones of coal mines holds significant implications for groundwater pollution mitigation strategies in mining regions. Taking Xinji No. 2 Coal Mine as an example, 15 water samples (including surface water, goaf water, sump water, working face drainage, rock roadway water, and coal roadway water) were collected from six surface and underground areas for hydrochemical and microbial detection analysis. The results show that bacterial genera such as Exiguobacterium and Mycobacterium cannot adapt to high-salinity environments with elevated K⁺ + Na⁺ concentrations, showing negative correlation with TDS. Microbial communities related to sulfate serve as important indicators for microbial technology-based pollution control in coal mine groundwater, where sulfate-reducing bacteria (e.g., norank_f__Desulfuromonadaceae) can reduce SO₄²⁻ concentrations and improve mine water quality. Low dissolved oxygen (DO) concentrations lead to decreased abundance of aerobic microorganisms, hindering the formation of stable microbial communities in mines. Affected by mine water quality, the confluence of mine drainage into rivers results in HCO₃⁻ and SO₄²⁻ concentrations at the confluence being higher than upstream, which gradually return to upstream concentrations after entering the downstream. However, due to the influx of nitrogen cycle-related bacteria and organic matter from mine water into surface water, increased microbial physiological activities and carbon sources cause NO₃⁻ concentrations to increase more than tenfold. The formation stages of mine water quality exhibit regional characteristics, with goaf areas showing distinct hydrochemical components and microbial communities compared to other zones. Based on this research, new microbial approaches for groundwater pollution control in coal mining areas are proposed: (1) selecting and cultivating functional microorganisms (such as SRB and organic matter-degrading bacteria) to develop biological materials for mine water remediation; (2) regulating the transformation of elements by adjusting carbon sources and oxygen supply according to indigenous microbial requirements, thereby reducing pollutant concentrations in water bodies.