Deny Tsakri

Ms. Deny Tsakri

orcid

Research Focus & Metrics

Academic Career Length

2Years (2025-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 June 2025 in Viruses
Verified
Journal Article
Open access
PDF file
Cleo AnastassopoulouCleo Anastassopoulou
Cleo Anastassopoulou
DTDeny Tsakri
Deny Tsakri
APAntonios-Periklis Panagiotopoulos
Antonios-Periklis Panagiotopoulos
CSChrysa Saldari
Chrysa Saldari
Antonia SagonaAntonia Sagona
Antonia Sagona
Athanasios TsakrisAthanasios Tsakris
Athanasios Tsakris
The increasing prevalence of multidrug-resistant (MDR) bacterial infections necessitates the exploration of alternative antimicrobial strategies, with phage therapy emerging as a viable option. However, the effectiveness of naturally occurring phages can be significantly limited by bacterial defense systems that include adsorption blocking, restriction–modification, CRISPR-Cas immunity, abortive infection, and NAD+ depletion defense systems. This review examines these bacterial defenses and their implications for phage therapy, while highlighting the potential of phages’ bioengineering to overcome these barriers. By leveraging synthetic biology, genetically engineered phages can be tailored to evade bacterial immunity through such modifications as receptor-binding protein engineering, anti-CRISPR gene incorporation, methylation pattern alterations, and enzymatic degradation of bacterial protective barriers. “Armed phages”, enhanced with antimicrobial peptides, CRISPR-based genome-editing tools, or immune-modulating factors, offer a novel therapeutic avenue. Clinical trials of bioengineered phages, currently SNIPR001 and LBP-EC01, showcase their potential to safely and effectively combat MDR infections. SNIPR001 has completed a Phase I clinical trial evaluating safety in healthy volunteers, while LBP-EC01 is in Phase II trials assessing its performance in the treatment of Escherichia coli-induced urinary tract infections in patients with a history of drug-resistant infections. As “armed phages” progress toward clinical application, they hold great promise for precision-targeted antimicrobial therapies and represent a critical innovation in addressing the global antibiotic resistance crisis.

10 May 2025 in Antibiotics
Verified
Journal Article
Open access
PDF file
APAntonios-Periklis Panagiotopoulos
Antonios-Periklis Panagiotopoulos
Antonia SagonaAntonia Sagona
Antonia Sagona
DTDeny Tsakri
Deny Tsakri
SFStefanos Ferous
Stefanos Ferous
Cleo AnastassopoulouCleo Anastassopoulou
Cleo Anastassopoulou
Athanasios TsakrisAthanasios Tsakris
Athanasios Tsakris
As antimicrobial resistance continues to undermine the efficacy of antibiotics, the global medical community is increasingly turning to alternative treatment modalities. Among these, phage therapy has re-emerged as a promising strategy for managing multidrug-resistant bacterial infections. Herein, we present and briefly discuss eight essential attributes of clinically relevant phages for therapy, which may be categorized broadly into virological and pharmacological characteristics. Virological attributes include a broad host range, a strictly lytic life cycle and the ability to manage the emergence of bacterial resistance to phages. Comprehensive genomic and proteomic characterization forms the foundation for selecting and engineering such candidates, ensuring both safety and predictability. From a pharmacological standpoint, phages should ideally show safety across relevant formulations and routes of administration, favorable pharmacokinetics, stability during storage and scalability in manufacturing. Advances in genomic analysis, artificial intelligence-driven phage selection and formulation technologies have further accelerated the translational potential of phage therapy. By systematically addressing each of these critical attributes, this work aims to inform the rational selection and development of therapeutic phages suitable for integration into the clinical practice.

9 October 2025 in Brain Stimulation
Verified
Journal Article
Open access
ABAlec J. Batts
Alec J. Batts
FTFotios Tsitsos
Fotios Tsitsos
JIJeannette Ingabire
Jeannette Ingabire
GDGuillaume Duret
Guillaume Duret
SGSamantha L. Gorman
Samantha L. Gorman
EKElisa Konofagou
Elisa Konofagou
Brain stimulation techniques are critical for unraveling the innerworkings of complex neuronal pathways governing both normal physiological function and pathologic states in neurological disorders. Focused ultrasound (FUS) is an emerging technique poised to significantly alter central nervous system (CNS) drug delivery and neuroscience research through non-invasive means. Magnetogenetics is a brain stimulation technique which may benefit from FUS technology in that alternating magnetic fields (AMF), like FUS , can pass through the skull without requiring surgery. Magnetogenetics involves the deposition of superparamagnetic iron-oxide nanoparticles (SPIONs) and overexpression of thermoreceptor transmembrane proteins (e.g. TRPV1 and TRPA1) in the brain. When an external AMF is applied, SPIONs generate local heating, which can activate thermoreceptors, depolarize the cell membrane and trigger action potentials in neurons. Monitoring neuronal activation by magnetogenetics approach can be facilitated by the co-expression of genetically-encoded voltage indicators (GEVI), which enable fluorescence-based detection of membrane depolarization. However, traditional surgical methods used to introduce these components into the brain are invasive and highly focal, precluding investigation of brain-wide neuronal pathways. Here, we demonstrate that our recently developed, flexible configuration for FUS therapy and ultrasound imaging, called theranostic ultrasound (ThUS), can transiently open the blood-brain barrier (BBB) and facilitate the non-invasive delivery of SPION and viral vectors encoding thermoreceptors and GEVI, to enable remote magnetogenetic modulation. We also report significant advances in ThUS pulse sequence design, where we developed a novel multi-target opening volume expansion (MOVE) pulse sequence to maximize BBB opening volume within a single ThUS treatment. ThUS MOVE yielded increased gene delivery commensurate with the number of targeted focal zones and achieved brain-wide expression of GEVI. The results presented herein not only demonstrate the feasibility for ThUS to facilitate a non-invasive brain stimulation approach, but also showcase a method for eliciting larger volumes of BBB opening within a single sonication which could dramatically improve gene delivery procedures for both preclinical research and therapeutic purposes in the future.

18 August 2026 in Vaccines
Verified
Journal Article
Open access
PDF file
APAntonios-Periklis Panagiotopoulos
Antonios-Periklis Panagiotopoulos
DTDeny Tsakri
Deny Tsakri
KRKyriaki Ranellou
Kyriaki Ranellou
Cleo AnastassopoulouCleo Anastassopoulou
Cleo Anastassopoulou
Athanasios TsakrisAthanasios Tsakris
Athanasios Tsakris
Seasonal influenza remains a major global public health challenge despite decades of vaccine development, underscoring the need for more effective and adaptable immunization strategies. The recently approved mRNA-1010 vaccine represents a promising advance by applying messenger RNA technology to a pathogen characterized by continuous antigenic drift. Recent Phase 3 clinical trials conducted in support of regulatory review have demonstrated robust immunogenicity and superior protective efficacy against seasonal influenza compared with standard influenza vaccines in adults aged 50 years and older. However, increased reactogenicity, particularly among younger adults, together with the need for continued post-marketing safety surveillance, highlights the balance between enhanced immune responses and tolerability. Beyond seasonal influenza, mRNA-1010 provides a foundation for next-generation respiratory vaccines, including combination formulations targeting influenza, SARS-CoV-2, and respiratory syncytial virus (RSV), while illustrating the broader potential of mRNA vaccine technology. At the same time, challenges related to manufacturing scalability, cost, cold-chain requirements, and global accessibility remain important considerations for widespread implementation. This perspective examines whether mRNA-1010 represents an incremental advance in influenza vaccination or a potential transformative milestone in respiratory immunization, while considering the continuing roles of alternative vaccine platforms in achieving optimal effectiveness, safety, and equitable global access.

12 June 2026 in Microorganisms
Verified
Journal Article
Open access
PDF file
AMAlexandra Mpakosi
Alexandra Mpakosi
VCVasileios Cholevas
Vasileios Cholevas
ALAlexandra Lianou
Alexandra Lianou
FTFotini Tziraki
Fotini Tziraki
IVIoannis Vogiatzis
Ioannis Vogiatzis
Andreas G. TsantesAndreas G. Tsantes
Andreas G. Tsantes
Zoonoses account for the majority of recognized mammalian viral spillover events, primarily originating from bats, rodents, and primates. Human activities have significantly accelerated these transmissions. This narrative review synthesizes the evolutionary, ecological, pathogen-related, and anthropogenic drivers of viral zoonotic spillover to identify critical leverage points for pandemic prevention. A narrative literature review was conducted. The analysis focused on factors enabling animal pathogens to transform into human pathogens, examining host species, pathogen traits, human–animal interactions, and environmental impacts. Pathogen transformation depends on host traits, contact frequency, and viral characteristics. Anthropogenic drivers—including livestock expansion, the bushmeat trade, wet markets, and the exotic pet industry—significantly elevate spillover risks. Effective pandemic prevention requires targeted interventions at the wildlife–livestock–human interfaces. A holistic, multidisciplinary collaboration between national governments and international organizations is essential to mitigate future risks.

15 September 2025 in Microorganisms
Verified
Journal Article
Open access
PDF file
AMAlexandra Mpakosi
Alexandra Mpakosi
CKChristiana Kaliouli-Antonopoulou
Christiana Kaliouli-Antonopoulou
VCVasileios Cholevas
Vasileios Cholevas
SCStamatios Cholevas
Stamatios Cholevas
ITIoannis Tzouvelekis
Ioannis Tzouvelekis
Andreas G. TsantesAndreas G. Tsantes
Andreas G. Tsantes
The endosymbiotic theory, which is the crucial starting point of eukaryogenesis, was first mentioned in the philosophy of the pre-Socratic Greek philosopher Empedocles. According to him, everything merges into units with differential survival. Similarly, during eukaryogenesis, the fusion of two distinct units resulted in the creation of a new cell type that possessed a newly formed organelle, the mitochondrion. Since then, the mitochondrion has been a key regulator of health and immunity. Furthermore, many of its characteristics and functions are due to its endosymbiotic bacterial origin. For example, it possesses damage-associated molecular patterns that can activate inflammatory signaling pathways, has circular DNA with CpG-rich motifs, as well as a double phospholipid membrane, and divides by fission. Mitochondrial function plays a critical role in maintaining cellular homeostasis, as they meet the cell’s energy needs and regulate many of its functions. However, after cellular damage due to infection, radiation, or toxins, mitochondrial stress and dysfunction can occur and mitochondrial DNA can be released into the cytosol. Cytosolic mitochondrial DNA can then activate proinflammatory signaling pathways, mediated by TLR9 and cGAS, as well as inflammasomes, triggering inflammation and autoimmunity.