Kihun Kim

Dr. Kihun Kim

orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 September 2022 in Journal of Medical Internet Research
Verified
Journal Article
Open access
SMSkander Tahar Mulder
Skander Tahar Mulder
AOAmir-Houshang Omidvari
Amir-Houshang Omidvari
ARAnja J Rueten-Budde
Anja J Rueten-Budde
PHPei-Hua Huang
Pei-Hua Huang
KKKihun Kim
Kihun Kim
R.P.M. Steegers-TheunissenR.P.M. Steegers-Theunissen
R.P.M. Steegers-Theunissen
A digital twin (DT), originally defined as a virtual representation of a physical asset, system, or process, is a new concept in health care. A DT in health care is not a single technology but a domain-adapted multimodal modeling approach incorporating the acquisition, management, analysis, prediction, and interpretation of data, aiming to improve medical decision-making. However, there are many challenges and barriers that must be overcome before a DT can be used in health care. In this viewpoint paper, we build on the current literature, address these challenges, and describe a dynamic DT in health care for optimizing individual patient health care journeys, specifically for women at risk for cardiovascular complications in the preconception and pregnancy periods and across the life course. We describe how we can commit multiple domains to developing this DT. With our cross-domain definition of the DT, we aim to define future goals, trade-offs, and methods that will guide the development of the dynamic DT and implementation strategies in health care.

10 June 2016 in Nucleic Acids Research
Verified
Journal Article
Open access
PDF file
MLMi-Kyung Lee
Mi-Kyung Lee
HKHee-Eun Kim
Hee-Eun Kim
EPEun-Byeol Park
Eun-Byeol Park
JLJanghyun Lee
Janghyun Lee
KKKihun Kim
Kihun Kim
BCByong-Seok Choi
Byong-Seok Choi
Retinoic acid-inducible gene I (RIG-I) recognizes specific molecular patterns of viral RNAs for inducing type I interferon. The C-terminal domain (CTD) of RIG-I binds to double-stranded RNA (dsRNA) with the 5′-triphosphate (5′-PPP), which induces a conformational change in RIG-I to an active form. It has been suggested that RIG-I detects infection of influenza A virus by recognizing the 5′-triphosphorylated panhandle structure of the viral RNA genome. Influenza panhandle RNA has a unique structure with a sharp helical bending. In spite of extensive studies of how viral RNAs activate RIG-I, whether the structural elements of the influenza panhandle RNA confer the ability to activate RIG-I signaling has been poorly explored. Here, we investigated the dynamics of the influenza panhandle RNA in complex with RIG-I CTD using NMR spectroscopy and showed that the bending structure of the panhandle RNA negates the requirement of a 5′-PPP moiety for RIG-I activation.

16 February 2023 in Antimicrobial Agents and Chemotherapy
Verified
Journal Article
Closed access
GCGabriel Cabot
Gabriel Cabot
KKKihun Kim
Kihun Kim
BMBrian L. Mark
Brian L. Mark
AOAntonio Oliver
Antonio Oliver
MKMazdak Khajehpour
Mazdak Khajehpour
Several Pseudomonas aeruginosa AmpC mutants have emerged that exhibit enhanced activity against ceftazidime and ceftolozane, while also evading inhibition by avibactam. Interestingly, P. aeruginosa strains harboring these AmpC mutations fortuitously exhibit enhanced carbapenem susceptibility.

3 March 2020 in RNA Biology
Verified
Journal Article
Closed access
KKKihun Kim
Kihun Kim
JHJihyun Hwang
Jihyun Hwang
JKJin Hong Kim
Jin Hong Kim
KSKyung-Pyo Son
Kyung-Pyo Son
YJYejin Jang
Yejin Jang
BCByong-Seok Choi
Byong-Seok Choi
Retinoic acid-inducible gene I (RIG-I) is responsible for innate immunity via the recognition of short double-stranded RNAs in the cytosol. With the clue that G-U wobble base pairs in the influenza A virus's RNA promoter region are responsible for RIG-I activation, we determined the complex structure of RIG-I Delta CARD and a short hairpin RNA with G-U wobble base pairs by X-ray crystallography. Interestingly, the overall helical backbone trace was not affected by the presence of the wobble base pairs; however, the base pair inclination and helical axis angle changed upon RIG-I binding. NMR spectroscopy revealed that RIG-I binding renders the flexible base pair of the influenza A virus's RNA promoter region between the two G-U wobble base pairs even more flexible. Binding to RNA with wobble base pairs resulted in a more flexible RIG-I complex. This flexible complex formation correlates with the entropy-favoured binding of RIG-I and RNA, which results in tighter binding affinity and RIG-I activation. This study suggests that the structure and dynamics of RIG-I are tailored to the binding of specific RNA sequences with different flexibility.

14 December 2021 in JMIR Preprints
Verified
Preprint
Open access
SMSkander Tahar Mulder
Skander Tahar Mulder
AOAmir-Houshang Omidvari
Amir-Houshang Omidvari
JAJ. Rueten-Budde Anja
J. Rueten-Budde Anja
PHPei-Hua Huang
Pei-Hua Huang
KKKihun Kim
Kihun Kim
R.P.M. Steegers-TheunissenR.P.M. Steegers-Theunissen
R.P.M. Steegers-Theunissen
UNSTRUCTURED A Digital Twin (DT), which is defined originally as a virtual representation of a physical asset, system or process, is a new concept in healthcare. DT in healthcare cannot be a single technology, but a domain adapted multi-modal modelling approach, which incorporates the acquisition, management, analysis, prediction, and interpretation of the data, aiming to improve medical decision making. However, there are many challenges and barriers that has to be overcome before a DT can be used in healthcare. In this viewpoint paper, we address these challenges, and envision a dynamic DT in healthcare for optimizing individual patient health care journeys. We describe how we can commit multiple domains to developing this DT. With our cross-domain definition of the DT, we aim to define future goals, trade-offs, and methods, which guide the development of the dynamic DT and the implementation strategies in healthcare.

Verified
Journal Article
Open access
PDF file
VVVera van Vliet
Vera van Vliet
OROlivia Roscow
Olivia Roscow
KKKihun Kim
Kihun Kim
BMBrian L. Mark
Brian L. Mark
MKMarjolein Kikkert
Marjolein Kikkert
CTChristine Tait-Burkard
Christine Tait-Burkard
Infectious bronchitis virus (IBV) is a coronavirus first isolated in the 1930s infecting chickens. IBV causes great economic losses to the global poultry industry, as it affects egg production and causes mortality by leaving the host susceptible to secondary bacterial infections. Even though vaccines are available, they are poorly cross-protective against new variants of the virus, which are always on the cusp of emerging. Effective antiviral therapies, or possibly the production of transgenic animals immune to IBV infection, are therefore sorely needed. As the papain-like protease (PLpro) of IBV has deubiquitinating activity besides its crucial ability to cleave the viral polyprotein, we have applied a novel strategy of selecting ubiquitin variants (UbVs) from a phage-displayed library that have high affinity to this viral protease. These UbVs were found to inhibit the deubiquitinating activity of PLpro and consequently obstruct the virus’s ability to evade the innate immune response in the host cell. By obstructing the proteolytic activity of PLpro, these UbVs were seemingly able to inhibit viral infection as assessed using immunofluorescence microscopy. Whilst virus infection was detected in around 5% of UbV-expressing cells, the virus was present in around 30–40% of GFP (control)-expressing cells. This suggests that the expression of UbVs indeed seems to inhibit IBV infection, making UbVs a potentially potent and innovative antiviral strategy in the quest for control of IBV infections.