Yufen Cao

Dr. Yufen Cao


Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2019 in Plant Biotechnology Journal
Verified
Journal Article
Open access
PDF file
XDXingguang Dong
Xingguang Dong
ZWZheng Wang
Zheng Wang
Luming TianLuming Tian
Luming Tian
YZYing Zhang
Ying Zhang
DQDan Qi
Dan Qi
YCYufen Cao
Yufen Cao
Summary: China is the origin and evolutionary centre of Oriental pears. Pyrus betuleafolia is a wild species native to China and distributed in the northern region, and it is widely used as rootstock. Here, we report the de novo assembly of the genome of P. betuleafolia‐Shanxi Duli using an integrated strategy that combines PacBio sequencing, BioNano mapping and chromosome conformation capture (Hi‐C) sequencing. The genome assembly size was 532.7 Mb, with a contig N50 of 1.57 Mb. A total of 59 552 protein‐coding genes and 247.4 Mb of repetitive sequences were annotated for this genome. The expansion genes in P. betuleafolia were significantly enriched in secondary metabolism, which may account for the organism's considerable environmental adaptability. An alignment analysis of orthologous genes showed that fruit size, sugar metabolism and transport, and photosynthetic efficiency were positively selected in Oriental pear during domestication. A total of 573 nucleotide‐binding site (NBS)‐type resistance gene analogues (RGAs) were identified in the P. betuleafolia genome, 150 of which are TIR‐NBS‐LRR (TNL)‐type genes, which represented the greatest number of TNL‐type genes among the published Rosaceae genomes and explained the strong disease resistance of this wild species. The study of flavour metabolism‐related genes showed that the anthocyanidin reductase (ANR) metabolic pathway affected the astringency of pear fruit and that sorbitol transporter (SOT) transmembrane transport may be the main factor affecting the accumulation of soluble organic matter. This high‐quality P. betuleafolia genome provides a valuable resource for the utilization of wild pear in fundamental pear studies and breeding.

17 February 2011 in Genetic Resources and Crop Evolution
Verified
Journal Article
Closed access
PDF file
YCYufen Cao
Yufen Cao
Luming TianLuming Tian
Luming Tian
YGYuan Gao
Yuan Gao
FLFengzhi Liu
Fengzhi Liu

1 January 2021 in Genomics
Verified
Journal Article
Closed access
JXJiayu Xu
Jiayu Xu
YZYing Zhang
Ying Zhang
DQDan Qi
Dan Qi
HHHongliang Huo
Hongliang Huo
XDXingguang Dong
Xingguang Dong
YCYufen Cao
Yufen Cao

8 March 2017 in Tree Genetics & Genomes
Verified
Journal Article
Closed access
PDF file
YCYao-Jun Chang
Yao-Jun Chang
YCYufen Cao
Yufen Cao
JZJin-Mei Zhang
Jin-Mei Zhang
Luming TianLuming Tian
Luming Tian
XDXing-Guang Dong
Xing-Guang Dong
XZXiao-Shuang Zhang
Xiao-Shuang Zhang

8 September 2018 in Journal of Separation Science
Verified
Journal Article
Closed access
PDF file
JXJiayu Xu
Jiayu Xu
YZYing Zhang
Ying Zhang
DQDan Qi
Dan Qi
HHHongliang Huo
Hongliang Huo
XDXingguang Dong
Xingguang Dong
YCYufen Cao
Yufen Cao

2 February 2012 in Genetic Resources and Crop Evolution
Verified
Journal Article
Closed access
PDF file
Luming TianLuming Tian
Luming Tian
YGYuan Gao
Yuan Gao
YCYufen Cao
Yufen Cao
FLFengzhi Liu
Fengzhi Liu
JYJun Yang
Jun Yang