James Michael Carpenter

Dr. James Michael Carpenter

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Research Focus & Metrics

Academic Career Length

36Years (1991-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 1997 in Systematic Biology
Verified
Journal Article
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MWM F Whiting
M F Whiting
JCJames Michael Carpenter
James Michael Carpenter
QWQ D Wheeler
Q D Wheeler
WWW C Wheeler
W C Wheeler
Phylogenetic relationships among the holometabolous insect orders were inferred from cladistic analysis of nucleotide sequences of 18S ribosomal DNA (rDNA) (85 exemplars) and 28S rDNA (52 exemplars) and morphological characters. Exemplar outgroup taxa were Collembola (1 sequence), Archaeognatha (1), Ephemerida (1), Odonata (2), Plecoptera (2), Blattodea (1), Mantodea (1), Dermaptera (1), Orthoptera (1), Phasmatodea (1), Embioptera (1), Psocoptera (1), Phthiraptera (1), Hemiptera (4), and Thysanoptera (1). Exemplar ingroup taxa were Coleoptera: Archostemata (1), Adephaga (2), and Polyphaga (7); Megaloptera (1); Raphidioptera (1); Neuroptera (sensu stricto = Planipennia): Mantispoidea (2), Hemerobioidea (2), and Myrmeleontoidea (2); Hymenoptera: Symphyta (4) and Apocrita (19); Trichoptera: Hydropsychoidea (1) and Limnephiloidea (2); Lepidoptera: Ditrysia (3); Siphonaptera: Pulicoidea (1) and Ceratophylloidea (2); Mecoptera: Meropeidae (1), Boreidae (1), Panorpidae (1), and Bittacidae (2); Diptera: Nematocera (1), Brachycera (2), and Cyclorrhapha (1); and Strepsiptera: Corioxenidae (1), Myrmecolacidae (1), Elenchidae (1), and Stylopidae (3). We analyzed ∼1 kilobase of 18S rDNA, starting 398 nucleotides downstream of the 5′ end, and ∼400 bp of 28S rDNA in expansion segment D3. Multiple alignment of the 18S and 28S sequences resulted in 1,116 nucleotide positions with 24 insert regions and 398 positions with 14 insert regions, respectively. All Strepsiptera and Neuroptera have large insert regions in 18S and 28S. The secondary structure of 18S insert 23 is composed of long stems that are GC rich in the basal Strepsiptera and AT rich in the more derived Strepsiptera. A matrix of 176 morphological characters was analyzed for holometabolous orders. Incongruence length difference tests indicate that the 28S + morphological data sets are incongruent but that 28S + 18S, 18S + morphology, and 28S + 18S + morphology fail to reject the hypothesis of congruence. Phylogenetic trees were generated by parsimony analysis, and clade robustness was evaluated by branch length, Bremer support, percentage of extra steps required to force paraphyly, and sensitivity analysis using the following parameters: gap weights, morphological character weights, methods of data set combination, removal of key taxa, and alignment region. The following are monophyletic under most or all combinations of parameter values: Holometabola, Polyphaga, Megaloptera + Raphidioptera, Neuroptera, Hymenoptera, Trichoptera, Lepidoptera, Amphiesmenoptera (Trichoptera + Lepidoptera), Siphonaptera, Siphonaptera + Mecoptera, Strepsiptera, Diptera, and Strepsiptera + Diptera (Halteria). Antliophora (Mecoptera + Diptera + Siphonaptera + Strepsiptera), Mecopterida (Antliophora + Amphiesmenoptera), and Hymenoptera + Mecopterida are supported in the majority of total evidence analyses. Mecoptera may be paraphyletic because Boreus is often placed as sister group to the fleas; hence, Siphonaptera may be subordinate within Mecoptera. The 18S sequences for Priacma (Coleoptera: Archostemata), Colpocaccus (Coleoptera: Adephaga), Agulla (Raphidioptera), and Corydalus (Megaloptera) are nearly identical, and Neuropterida are monophyletic only when those two beetle sequences are removed from the analysis. Goleoptera are therefore paraphyletic under almost all combinations of parameter values. Halteria and Amphiesmenoptera have high Bremer support values and long branch lengths. The data do not support placement of Strepsiptera outside of Holometabola nor as sister group to Coleoptera. We reject the notion that the monophyly of Halteria is due to long branch attraction because Strepsiptera and Diptera do not have the longest branches and there is phylogenetic congruence between molecules, across the entire parameter space, and between morphological and molecular data.

21 July 2011 in Cladistics
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Journal Article
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MSMichael J. Sharkey
Michael J. Sharkey
JCJames Michael Carpenter
James Michael Carpenter
LVLars Vilhelmsen
Lars Vilhelmsen
JHJohn Heraty
John Heraty
JLJohan Liljeblad
Johan Liljeblad
WWWard C. Wheeler
Ward C. Wheeler

28 February 2010 in Arthropod Systematics & Phylogeny
Verified
Journal Article
Open access
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KPKurt Pickett
Kurt Pickett
JCJames Michael Carpenter
James Michael Carpenter
A review of the literature concerning the phylogenetics of the Vespidae is presented. We also present a new phylogenetic analysis of the Vespidae based on what is by far the largest taxon sample to include molecular data, and the largest phenotypic character dataset ever compiled. Relationships among the subfamilies are Euparagiinae + (Masarinae + (Eumeninae + (Stenogastrinae + (Polistinae + Vespinae)))), with all the subfamilies monophyletic. A single origin of eusociality is thus supported. Our results empirically supersede all previous treatments and should be the preferred scaffold of the family for studies of social behavior.

24 December 2014 in Cladistics
Verified
Journal Article
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BSBernardo F. Santos
Bernardo F. Santos
APAnsel Payne
Ansel Payne
KPKurt M. Pickett
Kurt M. Pickett
JCJames Michael Carpenter
James Michael Carpenter

1 January 1999 in Zoologica Scripta
Verified
Journal Article
Closed access
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JCJames Michael Carpenter
James Michael Carpenter

10 September 2015 in Cladistics
Verified
Journal Article
Closed access
PDF file
APAdrien Perrard
Adrien Perrard
FLFederico Lopez‐Osorio
Federico Lopez‐Osorio
JCJames Michael Carpenter
James Michael Carpenter