Jiří Mareš

Jiří Mareš

orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
31 March 2022 in Nature Communications
Verified
Journal Article
Open access
PDF file
JJJabadurai Jayapaul
Jabadurai Jayapaul
SKSanna Komulainen
Sanna Komulainen
VZVladimir V. Zhivonitko
Vladimir V. Zhivonitko
JMJiří Mareš
Jiří Mareš
Chandan GiriChandan Giri
Chandan Giri
LSLeif Schröder
Leif Schröder
Guest capture and release are important properties of self-assembling nanostructures. Over time, a significant fraction of guests might engage in short-lived states with different symmetry and stereoselectivity and transit frequently between multiple environments, thereby escaping common spectroscopy techniques. Here, we investigate the cavity of an iron-based metal organic polyhedron (Fe-MOP) using spin-hyperpolarized 129Xe Chemical Exchange Saturation Transfer (hyper-CEST) NMR. We report strong signals unknown from previous studies that persist under different perturbations. On-the-fly delivery of hyperpolarized gas yields CEST signatures that reflect different Xe exchange kinetics from multiple environments. Dilute pools with ~ 104-fold lower spin numbers than reported for directly detected hyperpolarized nuclei are readily detected due to efficient guest turnover. The system is further probed by instantaneous and medium timescale perturbations. Computational modeling indicates that these signals originate likely from Xe bound to three Fe-MOP diastereomers (T, C3, S4). The symmetry thus induces steric effects with aperture size changes that tunes selective spin manipulation as it is employed in CEST MRI agents and, potentially, impacts other processes occurring on the millisecond time scale.

20 August 2018 in Physical Chemistry Chemical Physics
Verified
Journal Article
Open access
PDF file
JMJiří Mareš
Jiří Mareš
JVJuha Vaara
Juha Vaara
Transition metal complexes can possess a large magnetic susceptibility anisotropy, facilitating applications such as paramagnetic tags or shift agents in nuclear magnetic resonance (NMR) spectroscopy. Due to its g-shift and zero-field splitting (ZFS) we demonstrate on a Co(II) clathrochelate with an aliphatic 16-carbon chain, a modern approach for ab initio calculation of paramagnetic susceptibility. Due to its large anisotropy, large linear dimension but relatively low number of atoms, the chosen complex is especially well-suited for testing the long-range point-dipole approximation (PDA) for the pseudocontact shifts (PCSs) of paramagnetic NMR. A static structure of the complex is used to compare the limiting long-distance PDA with full first-principles quantum-mechanical calculation. A non-symmetric formula for the magnetic susceptibility tensor is necessary to be consistent with the latter. Comparison with experimental shifts is performed by conformational averaging over the chain dynamics using Monte Carlo simulation. We observe satisfactory accuracy from the rudimentary simulation and, more importantly, demonstrate the fast applicability of the ab initio PDA.

4 August 2011 in Journal of Chemical Theory and Computation
Verified
Journal Article
Closed access
JMJiří Mareš
Jiří Mareš
HLHelmi Liimatainen
Helmi Liimatainen
TPTeemu O. Pennanen
Teemu O. Pennanen
JVJuha Vaara
Juha Vaara

11 February 2014 in Physical Chemistry Chemical Physics
Verified
Journal Article
Closed access
PDF file
JMJiří Mareš
Jiří Mareš
MHMatti Hanni
Matti Hanni
PLPerttu Lantto
Perttu Lantto
JLJuhani Lounila
Juhani Lounila
JVJuha Vaara
Juha Vaara
Ni2+(aq) has been used for many decades as a model system for paramagnetic nuclear magnetic resonance (pNMR) relaxation studies. More recently, its magnetic properties and also nuclear magnetic relaxation rates have been studied computationally. We have calculated electron paramagnetic resonance and NMR parameters using quantum-mechanical (QM) computation of molecular dynamics snapshots, obtained using a polarizable empirical force field. Statistical averages of hyperfine coupling, g- and zero-field splitting tensors, as well as the pNMR shielding terms, are compared to the available experimental and computational data. In accordance with our previous work, the isotropic hyperfine coupling as well as nuclear shielding values agree well with experimental measurements for the 17O nuclei of water molecules in the first solvation shell of the nickel ion, whereas larger deviations are found for 1H centers. We report, for the first time, the Curie-type contribution to the pNMR relaxation rate using QM calculations together with Redfield relaxation theory. The Curie relaxation mechanism is analogous to chemical shift anisotropy relaxation, well-known in diamagnetic NMR. Due to the predominance of other types of paramagnetic relaxation mechanisms for this system, it is possible to extract the Curie term only computationally. The Curie mechanism alone would result in around 16 and 20 s−1 of relaxation rates (R1 and R2 respectively) for the 1H nuclei of water molecules bonded to the Ni2+ center, in a magnetic field of 11.7 T. The corresponding 17O relaxation rates are around 33 and 38 s−1. We also report the Curie contribution to the relaxation rate for molecules beyond the first solvation shell in a 1 M solution of Ni2+ in water.

9 May 2024 in The Journal of Physical Chemistry Letters
Verified
Journal Article
Open access
SMSarah E. Mailhiot
Sarah E. Mailhiot
PPPetri Peuravaara
Petri Peuravaara
BEBenjamin D. Egleston
Benjamin D. Egleston
RKRachel J. Kearsey
Rachel J. Kearsey
JMJiří Mareš
Jiří Mareš
VTVille-Veikko Telkki
Ville-Veikko Telkki
We exploited 129Xe NMR to investigate xenon gas uptake and dynamics in a porous liquid formed by dissolving porous organic cages in a cavity-excluded solvent. Quantitative 129Xe NMR shows that when the amount of xenon added to the sample is lower than the amount of cages present (subsaturation), the porous liquid absorbs almost all xenon atoms from the gas phase, with 30% of the cages occupied with a Xe atom. A simple two-site exchange model enables an estimate of the chemical shift of 129Xe in the cages, which is in good agreement with the value provided by first-principles modeling. T2 relaxation times allow the determination of the exchange rate of Xe between the solvent and cage sites as well as the activation energies of the exchange. The 129Xe NMR analysis also enables determination of the free energy of confinement, and it shows that Xe binding is predominantly enthalpy-driven.

23 August 2023 in Physical Chemistry Chemical Physics
Verified
Journal Article
Open access
PDF file
MMMegha Mohan
Megha Mohan
AAAnders Bruhn Arndal Andersen
Anders Bruhn Arndal Andersen
JMJiří Mareš
Jiří Mareš
NJNicholai Daugaard Jensen
Nicholai Daugaard Jensen
UNUlla Gro Nielsen
Ulla Gro Nielsen
JVJuha Vaara
Juha Vaara
Developed multi-step computational protocol successfully models the13C NMR shielding tensor of carbonate in paramagnetic Mg2−xNixAl-LDH.