Pines are major components of native forests and plantations in Europe, where they have both economic significance and an important ecological role. Diseases of pines are mainly caused by fungal and oomycete pathogens, and can significantly reduce the survival, vigor, and yield of both individual trees and entire stands or plantations. Pine pitch canker (PPC), caused by Fusarium circinatum (Nirenberg and O’Donnell), is among the most devastating pine diseases in the world, and is an example of an emergent invasive disease in Europe. The effects of microbial interactions on plant health, as well as the possible roles plant microbiomes may have in disease expression, have been the focus of several recent studies. Here, we describe the possible effects of co-infection with pathogenic fungi and oomycetes with F. circinatum on the health of pine seedlings and mature plants, in an attempt to expand our understanding of the role that biotic interactions may play in the future of PPC disease in European nurseries and forests. The available information on pine pathogens that are able to co-occur with F. circinatum in Europe is here reviewed and interpreted to theoretically predict the effects of such co-occurrences on pine survival, growth, and yield. Beside the awareness that F. circinatum may co-occurr on pines with other pathogens, an additional outcome from this review is an updating of the literature, including the so-called grey literature, to document the geographical distribution of the relevant pathogens and to facilitate differential diagnoses, particularly in nurseries, where some of them may cause symptoms similar to those induced by F. circinatum. An early and accurate diagnosis of F. circinatum, a pathogen that has been recently introduced and that is currently regulated in Europe, is essential to prevent its introduction and spread in plantings and forests.

The efficacy of biofumigation with Brassica carinata pellets (BioFence) to control vegetative and reproductive structures of Phytophthora cinnamomi was investigated in vitro at different doses and temperatures. Biofumigation was effective in inhibiting mycelial growth (culture diameter) and chlamydospore and zoospore germination, and was lethal at 24 mg of pellet per plate (approximately 0.4 mg/liter). The 50% effective concentration values showed that efficacy of B. carinata pellets in inhibiting or killing the vegetative and reproductive structures of P. cinnamomi was maximum at 15°C and decreased as temperature rose to 25°C. However, the fungicide effect was independent of the temperature. In vivo biofumigation of Quercus cerris seedlings with BioFence confirmed efficacy by reducing the inoculum density (CFU/g) of P. cinnamomi, thus protecting the host from root infection. The use of BioFence provides an alternative to synthetic pesticides to control P. cinnamomi within disease management programs in agroforestry systems.

The damping-off of Pinus radiata D.Don by Fusarium circinatum Nirenberg and O’Donnell represents a limiting factor in nursery production, while seed contamination with the pathogen is one of the main pathways of the pathogen movement between areas. Chemical and physical treatments have been applied with encouraging results and some limitations. In the present study, biocontrol of damping-off by F. circinatum is proposed with Trichoderma spp. complex showing complementary antagonism and biofumigation with commercial Brassica carinata A. Braun pellets with biocidal effect. Experiments were conducted in vitro and in vivo using batches of P. radiata seeds and two F. circinatum isolates. Results were highly positive, showing an excellent efficacy of a combination of Trichoderma spp. in a single preparation to reduce significantly the mortality of P. radiata seedlings in seeds bed experiment. Biofumigation with B. carinata pellets also showed efficacy in controlling the F. circinatum inoculum and reducing seed mortality in inoculated seed batches although showing some phytotoxic effect.

Sensitivity to mefenoxam, fresh Brassicaceae tissues, and Brassica pellets was evaluated in several isolates of Phytophthora nicotianae recovered from pepper and tomato plants. The isolates of P. nicotianae studied were classified as sensitive to mefenoxam, showing great variability among isolates in the 50 and 90% effective concentrations (EC₅₀ and EC₉₀, respectively). Sensitivity differentiated isolates from the two hosts of origin, being isolates from tomato plants more resistant to fungicide than those from pepper plants. This differentiation also occurred in the case of fresh Brassicaceae tissues assay. The most effective biofumigant in inhibiting mycelial growth of P. nicotianae isolates was Brassica nigra. The effectiveness of B. carinata, Sinapis alba, and B. oleracea varied depending on the dose. Isolates differed in susceptibility to compounds released by the Brassica pellets and then in the EC₅₀ and EC₉₀. No significant difference was found between the isolates depending on the host of origin. Greenhouse tests demonstrated the effectiveness of treatments with mefenoxam and with Brassica pellets to control P. nicotianae in pepper plants. Mefenoxam application could be a solution to the disease caused by P. nicotianae in tomato and pepper crops in this region but its use could increase resistance in populations. Biofumigation is a promising technique which can be further developed to form part of integrated pest management strategies.

A novel real‐time PCR assay based on the TaqMan probe was developed for the detection of Gnomoniopsis castaneae, causal agent of brown rot of chestnut kernels, and responsible for leaf necrosis, shoot blight and bark canker. A part of the pathogen life cycle is endophytic, colonizing all tissues of chestnut and additional hosts, which is suspected to play a key role in its epidemiology. Thus, a molecular tool for sensitive detection and quantification of G. castaneae in symptomatic and asymptomatic host tissues is urgently required to better understand G. castaneae ecology, biology and epidemiology. Primers and a species‐specific probe for G. castaneae were designed based on the sequence of the single‐copy elongation factor 1 alpha (EF1α) gene. The amplification efficiency of target DNA was 105.3% and the limit of detection of the assay was calculated at approximately 40 fg of pure fungal DNA. The pathogen was consistently detected in artificial mixtures of plant and pathogen DNAs with the same Limit of Detection (LOD) as pure fungal DNA. In naturally infected samples, the assay rapidly revealed the presence of the pathogen in all symptomatic specimens, as well as in asymptomatic tissues. Notably, a significant relationship between the results of a metagenomic HTS analysis and the qPCR assay on DNAs extracted from bulk fruit was found. This molecular tool will be of substantial aid in detecting and quantifying G. castaneae, even in the endophytic state, and in different host tissues.

Crown decline and mortality associated with collar lesions were observed on Carya cathayensis (Chinese hickory) trees in a plantation in Zhejiang province, China. Examination of active lesions resulted in the isolation of a homothallic, papillate Phytophthora sp. Detailed morphological and physiological studies and phylogenetic analysis, using ITS, betatubulin, cytochrome oxidase I, and heat shock protein 90 gene regions, revealed that all isolates belonged to an undescribed species residing in phylogenetic Clade 4, which is described here as Phytophthora cathayensis sp. nov. Inoculation trials were conducted under greenhouse conditions on C. cathayensis and C. illinoensis (pecan) plants to fulfill Koch postulates and hypothesize a possible pathway of the incursion. An existing report of a Phytophthora species with the same ITS sequence was reported on C. illinoensis from the USA in 2009 . The difference in susceptibility of the two inoculated Carya species, and the report from the USA, suggest a possible introduction with plant material from the USA to China.