Yan Zhang

Dr. Yan Zhang


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 July 2020 in Proceedings of the National Academy of Sciences
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YBYushi Bai
Yushi Bai
ZYZanlin Yu
Zanlin Yu
LALarry Ackerman
Larry Ackerman
YZYan Zhang
Yan Zhang
JBJohan Bonde
Johan Bonde
SHStefan Habelitz
Stefan Habelitz
Significance: How does enamel achieve its remarkable microstructure? This study reveals that the cleaved enamel protein amelogenin adopts a ribbon-like supramolecular structure that controls the growth of mineral into nanofibers. Protein nanoribbons of 15 to 20 nm in width were identified in dental enamel and replicated from a recombinant protein mimicking an enzymatic cleavage product of human amelogenin. In mineralization experiments, these protein structures templated the growth of highly oriented apatite nanofibers along their backbone from an amorphous precursor. In accordance with the natural process of enamel development, this in vitro model suggests that the ability of amelogenin nanoribbons to guide fibrous apatite growth is regulated by enzymatic processing and their interaction with acidic nonamelogenin proteins in the developing enamel matrix.

12 August 2015 in BMC Genomics
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CLChengcheng Liu
Chengcheng Liu
YNYulong Niu
Yulong Niu
XZXuedong Zhou
Xuedong Zhou
XXXin Xu
Xin Xu
YYYi Yang
Yi Yang
LZLiwei Zheng
Liwei Zheng
Ameloblast differentiation is the most critical stepwise process in amelogenesis, and it is controlled by precise molecular events. To better understand the mechanism controlling pre-ameloblasts (PABs) differentiation into secretory ameloblasts (SABs), a more precise identification of molecules and signaling networks will elucidate the mechanisms governing enamel formation and lay a foundation for enamel regeneration. We analyzed transcriptional profiles of human PABs and SABs. From a total of 28,869 analyzed transcripts, we identified 923 differentially expressed genes (DEGs) with p < 0.05 and Fold-change > 2. Among the DEGs, 647 genes showed elevated expression in PABs compared to SABs. Notably, 38 DEGs displayed greater than eight-fold changes. Comparative analysis revealed that highly expressed genes in PABs were involved in cell cycle control, DNA damage repair and apoptosis, while highly expressed genes in SABs were related to cell adhesion and extracellular matrix. Moreover, coexpression network analysis uncovered two highly conserved sub-networks contributing to differentiation, containing transcription regulators (RUNX2, ETV1 and ETV5), solute carrier family members (SLC15A1 and SLC7A11), enamel matrix protein (MMP20), and a polymodal excitatory ion channel (TRPA1). By combining comparative analysis and coexpression networks, this study provides novel biomarkers and research targets for ameloblast differentiation and the potential for their application in enamel regeneration.

6 July 2016 in Frontiers in Physiology
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Journal Article
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YNYukiko Nakano
Yukiko Nakano
MLMichael H. Le
Michael H. Le
DADawud Abduweli
Dawud Abduweli
SHSunita P. Ho
Sunita P. Ho
LRLillia V. Ryazanova
Lillia V. Ryazanova
YZYan Zhang
Yan Zhang
Magnesium ion (Mg2+) is the fourth most common cation in the human body, and has a crucial role in many physiological functions. Mg2+ homeostasis is an important contributor to bone development, however, its roles in the development of dental mineralized tissues have not yet been well known. We identified that transient receptor potential cation channel, subfamily M, member 7 (TRPM7), was significantly upregulated in the mature ameloblasts as compared to other ameloblasts through our whole transcript microarray analyses of the ameloblasts. TRPM7, an ion channel for divalent metal cations with an intrinsic serine/threonine protein kinase activity, has been characterized as a key regulator of whole body Mg2+ homeostasis. Semi-quantitative PCR and immunostaining for TRMP7 confirmed its upregulation during the maturation stage of enamel formation, at which ameloblasts direct rapid mineralization of the enamel matrix. The significantly hypomineralized craniofacial structures, including incisors, molars, and cranial bones were demonstrated by microCT analysis, von Kossa and trichrome staining in Trpm7Δkinase/+ mice. A previously generated heterozygous mouse model with the deletion of the TRPM7 kinase domain. Interestingly, the skeletal phenotype of Trpm7Δkinase/+ mice resembled those found in the tissue-nonspecific alkaline phosphatase (Alpl) KO mice, thus we further examined whether ALPL protein content and alkaline phosphatase (ALPase) activity in ameloblasts, odontoblasts and osteoblasts were affected in those mice. While ALPL protein in Trpm7Δkinase/+ mice remained at the similar level as that in wt mice, ALPase activities in the Trpm7Δkinase/+ mice were almost nonexistent. Supplemented magnesium successfully rescued the activities of ALPase in ameloblasts, odontoblasts and osteoblasts of Trpm7Δkinase/+ mice. These results suggested that TRPM7 is essential for mineralization of enamel as well as dentin and bone by providing sufficient Mg2+ for the ALPL activity, underlining the key importance of ALPL for biomineralization.

13 December 2019 in BMC Biology
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YZYan Zhang
Yan Zhang
LZLiwei Zheng
Liwei Zheng
MLMichael Le
Michael Le
YNYukiko Nakano
Yukiko Nakano
BCBarry Chan
Barry Chan
TKTerumi Kohwi-Shigematsu
Terumi Kohwi-Shigematsu
Background: Polarity is necessary for epithelial cells to perform distinct functions at their apical and basal surfaces. Oral epithelial cell-derived ameloblasts at secretory stage (SABs) synthesize large amounts of enamel matrix proteins (EMPs), largely amelogenins. EMPs are unidirectionally secreted into the enamel space through their apical cytoplasmic protrusions, or Tomes’ processes (TPs), to guide the enamel formation. Little is known about the transcriptional regulation underlying the establishment of cell polarity and unidirectional secretion of SABs.Results: The higher-order chromatin architecture of eukaryotic genome plays important roles in cell- and stage-specific transcriptional programming. A genome organizer, special AT-rich sequence-binding protein 1 (SATB1), was discovered to be significantly upregulated in ameloblasts compared to oral epithelial cells using a whole-transcript microarray analysis. TheSatb1−/−mice possessed deformed ameloblasts and a thin layer of hypomineralized and non-prismatic enamel. Remarkably,Satb1−/−ameloblasts at the secretory stage lost many morphological characteristics found at the apical surface of wild-type (wt)SABs, including the loss of Tomes’ processes, defective inter-ameloblastic adhesion, and filamentous actin architecture. As expected, the secretory function ofSatb1−/−SABs was compromised as amelogenins were largely retained in cells. We found the expression of epidermal growth factor receptor pathway substrate 8 (Eps8), a known regulator for actin filament assembly and small intestinal epithelial cytoplasmic protrusion formation, to be SATB1 dependent. In contrast towtSABs, EPS8 could not be detected at the apical surface ofSatb1−/−SABs.Eps8expression was greatly reduced in small intestinal epithelial cells inSatb1−/−mice as well, displaying defective intestinal microvilli.Conclusions: Our data show that SATB1 is essential for establishing secretory ameloblast cell polarity and for EMP secretion. In line with the deformed apical architecture, amelogenin transport to the apical secretory front and secretion into enamel space were impeded inSatb1−/−SABs resulting in a massive cytoplasmic accumulation of amelogenins and a thin layer of hypomineralized enamel. Our studies strongly suggest that SATB1-dependentEps8expression plays a critical role in cytoplasmic protrusion formation in both SABs and in small intestines. This study demonstrates the role of SATB1 in the regulation of amelogenesis and the potential application of SATB1 in ameloblast/enamel regeneration.

29 March 2013 in International Journal of Oral Science
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LZLiwei Zheng
Liwei Zheng
LLLogan Linthicum
Logan Linthicum
PDPamela K DenBesten
Pamela K DenBesten
YZYan Zhang
Yan Zhang
This study aimed to compare epithelial cells derived from human embryonic stem cells (hESCs) to human ameloblast-lineage cells (ALCs), as a way to determine their potential use as a cell source for ameloblast regeneration. Induced by various concentrations of bone morphogenetic protein 4 (BMP4), retinoic acid (RA) and lithium chloride (LiCl) for 7 days, hESCs adopted cobble-stone epithelial phenotype (hESC-derived epithelial cells (ES-ECs)) and expressed cytokeratin 14. Compared with ALCs and oral epithelial cells (OE), ES-ECs expressed amelogenesis-associated genes similar to ALCs. ES-ECs were compared with human fetal skin epithelium, human fetal oral buccal mucosal epithelial cells and human ALCs for their expression pattern of cytokeratins as well. ALCs had relatively high expression levels of cytokeratin 76, which was also found to be upregulated in ES-ECs. Based on the present study, with the similarity of gene expression with ALCs, ES-ECs are a promising potential cell source for regeneration, which are not available in erupted human teeth for regeneration of enamel.

Verified
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KKKristóf Kádár
Kristóf Kádár
VJViktória Juhász
Viktória Juhász
AFAnna Földes
Anna Földes
RRRóbert Rácz
Róbert Rácz
YZYan Zhang
Yan Zhang
ÁZÁkos Zsembery
Ákos Zsembery
TRPM7 plays an important role in cellular Ca2+, Zn2+ and Mg2+ homeostasis. TRPM7 channels are abundantly expressed in ameloblasts and, in the absence of TRPM7, dental enamel is hypomineralized. The potential role of TRPM7 channels in Ca2+ transport during amelogenesis was investigated in the HAT-7 rat ameloblast cell line. The cells showed strong TRPM7 mRNA and protein expression. Characteristic TRPM7 transmembrane currents were observed, which increased in the absence of intracellular Mg2+ ([Mg2+]i), were reduced by elevated [Mg2+]i, and were inhibited by the TRPM7 inhibitors NS8593 and FTY720. Mibefradil evoked similar currents, which were suppressed by elevated [Mg2+]i, reducing extracellular pH stimulated transmembrane currents, which were inhibited by FTY720. Naltriben and mibefradil both evoked Ca2+ influx, which was further enhanced by the acidic intracellular conditions. The SOCE inhibitor BTP2 blocked Ca2+ entry induced by naltriben but not by mibefradil. Thus, in HAT-7 cells, TRPM7 may serves both as a potential modulator of Orai-dependent Ca2+ uptake and as an independent Ca2+ entry pathway sensitive to pH. Therefore, TRPM7 may contribute directly to transepithelial Ca2+ transport in amelogenesis.