Jernej Avsenik

Dr. Jernej Avsenik


Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 March 2015 in Radiology and Oncology
Verified
Journal Article
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JAJernej Avsenik
Jernej Avsenik
SBSotirios Bisdas
Sotirios Bisdas
KPKatarina Surlan Popovic
Katarina Surlan Popovic
Background. The blood-brain barrier represents the selective diffusion barrier at the level of the cerebral microvascular endothelium. Other functions of blood-brain barrier include transport, signaling and osmoregulation. Endothelial cells interact with surrounding astrocytes, pericytes and neurons. These interactions are crucial to the development, structural integrity and function of the cerebral microvascular endothelium. Dysfunctional blood-brain barrier has been associated with pathologies such as acute stroke, tumors, inflammatory and neurodegenerative diseases. Conclusions. Blood-brain barrier permeability can be evaluated in vivo by perfusion computed tomography - an efficient diagnostic method that involves the sequential acquisition of tomographic images during the intravenous administration of iodinated contrast material. The major clinical applications of perfusion computed tomography are in acute stroke and in brain tumor imaging.

19 July 2016 in Radiology and Oncology
Verified
Journal Article
Open access
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JAJernej Avsenik
Jernej Avsenik
JOJanja Pretnar Oblak
Janja Pretnar Oblak
KPKatarina Surlan Popovic
Katarina Surlan Popovic
The aim of the study was to investigate the sensitivity and specificity of non-contrast computed tomography (NCCT) in the diagnosis of cerebral venous sinus thrombosis (CVST). Methods. Screening our neurological department database, we identified 53 patients who were admitted to neurological emergency department with clinical signs of CVST. Two independent observers assessed the NCCT scans for the presence of CVST. CT venography and/or MR venography were used as a reference standard. Interobserver agreement between the two readers was assessed using Kappa statistic. Attenuation inside the cerebral venous sinuses was measured and compared between the patient and the control group. CVST was confirmed in 13 patients. Sensitivity and specificity of NCCT for overall presence of CVST were 100% and 83%, respectively, with Kappa value of 0.72 (a good agreement between observers). The attenuation values between CVST patients and control group were significantly different (73.4 ± 14.12 HU vs. 58.1 ± 7.58 HU; p = 0.000). The ROC analysis showed an area under the curve (AUC) of 0.916 (95% CI, 0.827 - 1.00) and an optimal cutoff value of 64 HU, leading to a sensitivity of 85% and specificity of 87%. NCCT as a first-line investigation has a high value for diagnosis of CVST in the emergency setting. The additional measurement of the sinus attenuation may improve the diagnostic value of the examination.

1 October 2017 in Multiple Sclerosis and Related Disorders
Verified
Journal Article
Closed access
JAJernej Avsenik
Jernej Avsenik
ALA. Horvat Ledinek
A. Horvat Ledinek
KPK. Šurlan Popovič
K. Šurlan Popovič

1 October 2020 in Journal of Trauma and Acute Care Surgery
Verified
Journal Article
Closed access
JAJernej Avsenik
Jernej Avsenik
FBFajko F. MD Bajrović
Fajko F. MD Bajrović
PGPrimož MD Gradišek
Primož MD Gradišek
NKNataša Kejžar
Nataša Kejžar
KPKatarina Šurlan MD Popović
Katarina Šurlan MD Popović
BACKGROUND Currently established prognostic models in traumatic brain injury (TBI) include non-contrast CT which is insensitive to early perfusion alterations associated with secondary brain injury. Perfusion CT (PCT) on the other hand offers insight into early perfusion abnormalities. We hypothesized that adding CT perfusion and permeability data to the established outcome predictors improves the performance of the prognostic model. METHODS A prospective cohort study of consecutive 50 adult patients with head injury and GCS score ≤ 12 was performed at a single Level 1 Trauma Centre. PCT was added to routine control CT 12 – 24 h after admission. Region of interest analysis was performed in 6 major vascular territories on perfusion and permeability parametric maps. Glasgow Outcome Scale (GOS) was used 6 months later to categorize patients' functional outcomes to favorable (GOS > 3) or unfavorable (GOS ≤ 3). We defined core prognostic model, consisting of age, motor GCS score, pupillary reactivity and CT Rotterdam Score. Next, we added perfusion and permeability data as predictors and compared updated models to the core model using cross-validated areas under the receiver operator curves (cv-AUC). RESULTS Significant advantage over core model was shown by the model, containing both mean cerebral extravascular-extracellular volume per unit of tissue volume (VEmean) and cerebral blood volume of the least perfused arterial territory (CBVmin) in addition to core predictors (cv-AUC (95% CI) 0.75 (0.51, 0.84) vs. 0.6 (0.37, 0.74)). CONCLUSIONS The development of cerebral ischemia and traumatic cerebral edema constitutes the secondary brain injury and represents the target for therapeutic interventions. Our results suggest that adding CT perfusion and permeability data to the established outcome predictors improves the performance of the prognostic model in the setting of moderate and severe TBI. Level of evidence III, prognostic study.

10 June 2026 in Nature
Verified
Journal Article
Open access
JSJai Sidpra
Jai Sidpra
VLValentina Lind
Valentina Lind
ACAlexander L. Cohen
Alexander L. Cohen
FSFrederic L. W. V. J. Schaper
Frederic L. W. V. J. Schaper
TSThomas J. Stone
Thomas J. Stone
DHDarren R. Hargrave
Darren R. Hargrave
Diffuse midline gliomas (DMGs) are near-universally lethal tumours of the childhood central nervous system 1,2 . In animal models, DMGs form brain-wide integrated networks through neuron-to-glioma synapses 3–6 and glioma-to-glioma gap junctional coupling 3 . This extensive connectivity robustly promotes the growth and invasion of DMG 3–9 and other glial malignancies 10–12 through paracrine mechanisms and direct neuron-to-glioma synapses. However, the organization and clinical implications of these connections in the living human brain remain to be elucidated. Here, we develop tumour network mapping to compute the brain-wide connectivity profile of DMG, defining a conserved brain network across pontine and thalamic DMG associated with patient short-term survival (DMG network). Tumour functional connectivity with the DMG network was independently predictive of patient overall survival across two external validation cohorts. Tumour growth mapped to DMG network-specific trajectories and peak in-network neurometabolic changes across development spatiotemporally aligned with the peak age incidence of DMG. Analyses of single-nucleus RNA sequencing data confirmed diverse synaptic gene enrichment in high-connectivity DMG. Strikingly, incidental surgical resection of high-connectivity thalamic DMG tissue conferred a significant survival advantage. Collectively, these data define a conserved and prognostically important brain network in children with DMG, consistent with the hypothesis that DMGs exploit otherwise healthy brain circuits to promote tumour growth.