Emily Rose Thompson

Ms. Emily Rose Thompson

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 June 2025 in Open Forum Infectious Diseases
Verified
Journal Article
Open access
APAaron Pulsipher
Aaron Pulsipher
HVHolenarasipur Vikram
Holenarasipur Vikram
MGMichael Gotway
Michael Gotway
RCRodrigo Cartin-Ceba
Rodrigo Cartin-Ceba
KHKyle J Henry
Kyle J Henry
KHKealy Ham
Kealy Ham
Background: Pneumocystis jirovecii pneumonia (PCP) is increasingly seen in patients who are non-HIV immunocompromised hosts, yet modern risk factors and outcomes are poorly recognized and defined. Methods: A retrospective review was conducted of adult patients who met criteria for proven or probable PCP from 2017 to 2024 across a large academic multicenter health system. The primary outcome was mortality among cohorts, defined by etiology of immunosuppression through univariate and age-adjusted logistic regression. Secondary analyses included trends in annual diagnoses and testing patterns. Results: A total of 701 patients met criteria for inclusion, representing one of the largest clinically characterized cohorts of PCP to date. The median age was 65 years (IQR, 54–73) and 62% were male. The most common risk groups were hematologic malignancy (32.2%), solid tumor cancers receiving chemotherapy (22.4%), and autoimmune disease with immunosuppression (17.7%). Annual PCP diagnoses increased at a rate of 15.8% (95% CI, 8.9%–23.2%) in parallel with increased testing. Only 5.4% of patients were receiving prophylaxis at the time of diagnosis. Overall mortality was 20% (95% CI, 17%–23%) and highest in cirrhosis (adjusted odds ratio, 6.24; 95% CI, 2.84–13.69; P < .001). Conclusions: PCP in the current era affects a broad range of patients who are immunocompromised, with high associated mortality and low rates of prophylaxis. Patients with solid tumors and those with cirrhosis are at particularly high risk of mortality. These findings highlight the need to reassess and redefine PCP prophylaxis guidelines in specific populations and our understanding of who is at risk.

13 August 2024 in BMJ Global Health
Verified
Journal Article
Open access
PDF file
ETEmily Rose Thompson
Emily Rose Thompson
GKGetachew Kassa
Getachew Kassa
RORobera Olana
Robera Olana
CPClara Pons-Duran
Clara Pons-Duran
FGFrederick Goddard
Frederick Goddard
GCGrace J Chan
Grace J Chan
Introduction: Despite the progress in reducing child mortality, the rate remains high, particularly in sub-Saharan African countries. Limited data exist on child survival and other birth outcomes by sex. This study compared survival rates and birth outcomes by sex among neonates and children under 2 in Ethiopia. Methods: Women who gave birth after 28 weeks of gestation and their newborns were included in the analysis. Survival probabilities were estimated for males and females in the neonatal period as well as the 2-year period following birth using Kaplan-Meier curves. HRs and 95% CIs were compared between males and females under 2. Descriptive statistics and χ2 tests were used to determine the sex-disaggregated variation in the birth outcomes of preterm birth, low birth weight (LBW), stillbirth, small for gestational age (SGA) and large for gestational age (LGA). Results: The study included a total of 3904 women and child pairs. The neonatal mortality rate for males (3.4%, 95% CI 2.6% to 4.2%) was higher compared with females (1.7%, 95% CI 1.1% to 2.3%). The hazard of death during the first 28 days of life was approximately two times higher for males compared with females (HR 1.99, 95% CI 1.30 to 3.06) but was not significantly different after this period. While there was a non-significant difference between males and females in the proportion of preterm, LBW and LGA births, we found a significantly higher proportion of stillbirth (2.7% vs 1.3%, p=0.003) and SGA (20.5% vs 15.6%, p<0.001) for males compared with females. Conclusions: This study identified a significant sex difference in mortality and birth outcomes. We recommend focusing future research on the mechanisms of these sex differences in order to better design intervention programmes to reduce disparities and improve outcomes for neonates.

1 April 2026 in Radiology: Cardiothoracic Imaging
Verified
Journal Article
Closed access
APAaron Pulsipher
Aaron Pulsipher
KHKealy Ham
Kealy Ham
HVHolenarasipur Vikram
Holenarasipur Vikram
KHKyle J. Henry
Kyle J. Henry
ETEmily Rose Thompson
Emily Rose Thompson
MGMichael Gotway
Michael Gotway
This article describes the typical and atypical chest imaging appearances of Pneumocystis jirovecii pneumonia.

3 July 2025 in Journal of Fungi
Verified
Journal Article
Open access
PDF file
APAaron Pulsipher
Aaron Pulsipher
MBMichele Barnhill
Michele Barnhill
HVHolenarasipur Vikram
Holenarasipur Vikram
MGMichael Gotway
Michael Gotway
RCRodrigo Cartin-Ceba
Rodrigo Cartin-Ceba
KHKealy Ham
Kealy Ham
Pneumocystis pneumonia (PCP) is a serious fungal infection affecting immunocompromised hosts. Decompensated cirrhosis leads to cirrhosis-associated immune dysfunction (CAID), a form of impaired cellular immunity that may predispose patients to opportunistic infections such as PCP. We conducted a retrospective review of 727 patients with proven or probable PCP from 2017 to 2025. Of these, 33 had decompensated cirrhosis. These patients were stratified into two groups: Cirrhosis Only (n = 16) and Cirrhosis with Additional Immunocompromising Conditions (n = 17). Among the patients with cirrhosis, the overall mortality was 48%, with the 90-day mortality reaching 57.6% (95% CI: 39.2–74.5%). Compared with those without cirrhosis, the patients with cirrhosis had a higher risk of mortality (OR: 4.08, 95% CI: 2.01–8.30, p < 0.001), increased intensive care unit (ICU) admission (87% vs. 42%, p < 0.001), and greater need for renal replacement therapy (54.6% vs. 7.5%, p < 0.001). These findings suggest that decompensated cirrhosis alone may represent a sufficient and underrecognized risk factor for PCP, with a high associated mortality. Given the preventable nature of this infection, future studies are needed to assess the incidence, define the risk, and investigate the role of prophylaxis in this vulnerable population.

1 April 2026 in Radiology: Cardiothoracic Imaging
Verified
Journal Article
Closed access
APAaron Pulsipher
Aaron Pulsipher
KHKealy Ham
Kealy Ham
HVHolenarasipur Vikram
Holenarasipur Vikram
KHKyle J. Henry
Kyle J. Henry
ETEmily Rose Thompson
Emily Rose Thompson
MGMichael Gotway
Michael Gotway
In a large, multicenter cohort of HIV and non–HIV immunocompromised patients with Pneumocystis jirovecii pneumonia, chest CT most commonly demonstrated diffusely distributed ground-glass opacity, with no imaging features distinguishing between immunocompromise etiology.

9 September 2026 in Antimicrobial Stewardship & Healthcare Epidemiology
Verified
Journal Article
Open access
PDF file
EMEvan K. Mallory
Evan K. Mallory
DDDrew T. Dickinson
Drew T. Dickinson
DKDylan Lee Kosaski
Dylan Lee Kosaski
JSJacob Schwarz
Jacob Schwarz
ETEmily Rose Thompson
Emily Rose Thompson
DIDan Ilges
Dan Ilges
Objective: To validate risk factors for methicillin-resistant Staphylococcus aureus (MRSA) and Pseudomonas aeruginosa in patients hospitalized with community-acquired pneumonia (CAP). Design: Retrospective, single-center, cohort study from October 1, 2018, to March 31, 2023. Setting: Mayo Clinic Hospital in Phoenix, AZ. Participants: Adult patients with CAP, identified using ICD-10 diagnosis codes, receipt of systemic antibiotics for a “respiratory tract infection” within 48 hours of hospitalization, and availability of respiratory cultures. Methods: Multivariate logistic regression was used to identify factors independently associated with MRSA or P. aeruginosa isolation in respiratory cultures. Results: A total of 1,485 patients met inclusion criteria; 32 (2.2%) had MRSA and 81 (5.5%) had P. aeruginosa isolated from respiratory culture. Multivariate logistic regression analyses identified substance use disorder [aOR 8.29, P < .001], influenza [aOR 7.64, P = .003], lung abscess/empyema [aOR 4.58, P = .031], and peptic ulcer disease (PUD) [aOR 4.09, P = .017] as MRSA risk factors. Bronchiectasis [aOR 3.67, P < .001], PUD [aOR 3.48, P = .006], and COPD [aOR 2.60, P = .005] were independently associated with P. aeruginosa . Immunocompromised conditions, including transplantation (solid organ and hematopoietic stem cell) and malignant tumor were not independently associated with either organism. Conclusions: Our results substantiate previously demonstrated risk factors for MRSA and P. aeruginosa in CAP. We did not observe an independent association between immunosuppressed conditions evaluated and isolation of MRSA or P. aeruginosa .