Stefano Bonora

Dr. Stefano Bonora


Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 August 2015 in Optics Express
Verified
Journal Article
Open access
PDF file
SBStefano Bonora
Stefano Bonora
YJYifan Jian
Yifan Jian
PZPengfei Zhang
Pengfei Zhang
Azhar ZamAzhar Zam
Azhar Zam
EPEdward N. Pugh
Edward N. Pugh
MSMarinko V. Sarunic
Marinko V. Sarunic
Adaptive optics is rapidly transforming microscopy and high-resolution ophthalmic imaging. The adaptive elements commonly used to control optical wavefronts are liquid crystal spatial light modulators and deformable mirrors. We introduce a novel Multi-actuator Adaptive Lens that can correct aberrations to high order, and which has the potential to increase the spread of adaptive optics to many new applications by simplifying its integration with existing systems. Our method combines an adaptive lens with an imaged-based optimization control that allows the correction of images to the diffraction limit, and provides a reduction of hardware complexity with respect to existing state-of-the-art adaptive optics systems. The Multi-actuator Adaptive Lens design that we present can correct wavefront aberrations up to the 4th order of the Zernike polynomial characterization. The performance of the Multi-actuator Adaptive Lens is demonstrated in a wide field microscope, using a Shack-Hartmann wavefront sensor for closed loop control. The Multi-actuator Adaptive Lens and image-based wavefront-sensorless control were also integrated into the objective of a Fourier Domain Optical Coherence Tomography system for in vivo imaging of mouse retinal structures. The experimental results demonstrate that the insertion of the Multi-actuator Objective Lens can generate arbitrary wavefronts to correct aberrations down to the diffraction limit, and can be easily integrated into optical systems to improve the quality of aberrated images.

13 November 2013 in Optics Letters
Verified
Journal Article
Closed access
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SBStefano Bonora
Stefano Bonora
RZR. J. Zawadzki
R. J. Zawadzki
Optics InfoBase is the Optical Society's online library for flagship journals, partnered and copublished journals, and recent proceedings from OSA conferences.

30 January 2018 in IEEE Transactions on Industrial Informatics
Verified
Journal Article
Closed access
JMJacopo Mocci
Jacopo Mocci
MQMartino Quintavalla
Martino Quintavalla
CTCosmo Trestino
Cosmo Trestino
SBStefano Bonora
Stefano Bonora
RMRiccardo Muradore
Riccardo Muradore
An Adaptive Optics (AO) system is composed of three key elements: a wave-front sensor that detects the aberrations; a deformable mirror that provides the wavefront correction and a closed-loop control system that elaborates the measurements acquired by the sensor and sends commands to the mirror. The control system can be implemented on a dedicated platform (e.g. FPGA) or on general-purpose platforms (e.g. CPU, GPU). Dedicated hardware guarantees high performance but needs more development time and programming skills than general-purpose hardware, leading to a less maintainable system for the end user. The proposed solution aims to be a cost-effective, multi-platform, CPU-based flexible framework. The software, developed in C++ and using Eigen and Qt libraries, provides the tools to tune and control the adaptive optics system, from wavefront measurement settings to controller parameters. A logging feature allows in-depth offline data analysis, while scripting enables execution of batch experiments. The adaptive optics system is tuned and evaluated by interfacing the wavefront sensor and deformable mirror with our software architecture. The results show that the proposed solution is able to correct the aberrations of a low to medium size SCAO system, with a control frequency up to 500Hz and computational latency of 0.04ms, using a consumer-grade notebook.

16 February 2012 in Optics Express
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Journal Article
Closed access
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SBStefano Bonora
Stefano Bonora
DCD. Coburn
D. Coburn
UBU. Bortolozzo
U. Bortolozzo
CDC. Dainty
C. Dainty
SRS. Residori
S. Residori
We demonstrate that a novel actuation scheme, employed in an optical control deformable mirror, can be more convenient than the conventional discrete fixed actuators approach. The Photo-Controlled Deformable Mirror (PCDM) mirror leverages consumer LCD display technology in the wavefront forming control, enabling flexible programmable configuration of the actuation geometry. This new approach simplifies the driving electronics, relaxing the per channel cost of high spatial control of the wavefront forming surface. In our experiment we tested the PCDM by applying the equivalent of 36, 76 and 201 actuators, this by just changing the light driving pattern. We demonstrated the effectiveness of this technique in a closed loop setup, which showed performances superior to the state of the art for similar DM, while providing a significant reduction in the hardware complexity.

7 September 2016 in Scientific Reports
Verified
Journal Article
Open access
MCMichelle Cua
Michelle Cua
DWDaniel J. Wahl
Daniel J. Wahl
YZYuan Zhao
Yuan Zhao
SLSujin Lee
Sujin Lee
SBStefano Bonora
Stefano Bonora
MSMarinko V. Sarunic
Marinko V. Sarunic
Multiphoton microscopy enables imaging deep into scattering tissues. The efficient generation of non-linear optical effects is related to both the pulse duration (typically on the order of femtoseconds) and the size of the focused spot. Aberrations introduced by refractive index inhomogeneity in the sample distort the wavefront and enlarge the focal spot, which reduces the multiphoton signal. Traditional approaches to adaptive optics wavefront correction are not effective in thick or multi-layered scattering media. In this report, we present sensorless adaptive optics (SAO) using low-coherence interferometric detection of the excitation light for depth-resolved aberration correction of two-photon excited fluorescence (TPEF) in biological tissue. We demonstrate coherence-gated SAO TPEF using a transmissive multi-actuator adaptive lens for in vivo imaging in a mouse retina. This configuration has significant potential for reducing the laser power required for adaptive optics multiphoton imaging, and for facilitating integration with existing systems.

9 December 2021 in Biomedical Optics Express
Verified
Journal Article
Closed access
TFTommaso Furieri
Tommaso Furieri
DADaniele Ancora
Daniele Ancora
GCGianmaria Calisesi
Gianmaria Calisesi
SMStefano Morara
Stefano Morara
ABAndrea Bassi
Andrea Bassi
SBStefano Bonora
Stefano Bonora
The aberrations induced by the sample and/or by the sample holder limit the resolution of optical microscopes. Wavefront correction can be achieved using a deformable mirror with wavefront sensorless optimization algorithms but, despite the complexity of these systems, the level of correction is often limited to a small area in the field of view of the microscope. In this work, we present a plug and play module for aberration measurement and correction. The wavefront correction is performed through direct wavefront reconstruction using the spinning-pupil aberration measurement and controlling a deformable lens in closed loop. The lens corrects the aberrations in the center of the field of view, leaving residual aberrations at the margins, that are removed by anisoplanatic deconvolution. We present experimental results obtained in fluorescence microscopy, with a wide field and a light sheet fluorescence microscope. These results indicate that detection and correction over the full field of view can be achieved with a compact transmissive module placed in the detection path of the fluorescence microscope.