One of the commonly accepted approaches to estimate protein–protein interactions (PPI) in aqueous solutions is the analysis of their translational diffusion. The present review article observes a phenomenological approach to analyze PPI effects via concentration dependencies of self- and collective translational diffusion coefficient for several spheroidal proteins derived from the pulsed field gradient NMR (PFG NMR) and dynamic light scattering (DLS), respectively. These proteins are rigid globular α-chymotrypsin (ChTr) and human serum albumin (HSA), and partly disordered α-casein (α-CN) and β-lactoglobulin (β-Lg). The PPI analysis enabled us to reveal the dominance of intermolecular repulsion at low ionic strength of solution (0.003–0.01 M) for all studied proteins. The increase in the ionic strength to 0.1–1.0 M leads to the screening of protein charges, resulting in the decrease of the protein electrostatic potential. The increase of the van der Waals potential for ChTr and α-CN characterizes their propensity towards unstable weak attractive interactions. The decrease of van der Waals interactions for β-Lg is probably associated with the formation of stable oligomers by this protein. The PPI, estimated with the help of interaction potential and idealized spherical molecular geometry, are in good agreement with experimental data.
We construct a double-well potential for which the Schr\"odinger equation can be exactly solved via reducing to the confluent Heun's one. Thus the wave function is expressed via the confluent Heun's function. The latter is tabulated in {\sl {Maple}} so that the obtained solution is easily treated. The potential is infinite at the boundaries of the final interval that makes it to be highly suitable for modeling hydrogen bonds (both ordinary and low-barrier ones). We exemplify theoretical results by detailed treating the hydrogen bond in $KHCO_3$ and show their good agreement with literature experimental data.
The exact solution of the one-dimensional Schr\"odinger equation with symmetric trigonometric double-well potential (DWP) is obtained via angular oblate spheroidal function. The results of stringent analytic calculation for the ground state splitting of ring-puckering vibration in the 1,3-dioxole (as an example of the case when the ground state tunneling doublet is well below the potential barrier top) and 2,3-dihydrofuran (as an example of the case when the ground state tunneling doublet is close to the potential barrier top) are compared with several variants of approximate semiclassical (WKB) ones. This enables us to verify the accuracy of various WKB formulas suggested in the literature: 1. ordinary WKB, i.e., the formula from the Landau and Lifshitz textbook; 2. Garg's formula; 3. instanton approach. We show that for the former case all three variants of WKB provide good accuracy while for the latter one they are very inaccurate. The results obtained provide a new theoretical tool for describing relevant experimental data on IR spectroscopy of ring-puckering vibrations.
The one-dimensional Schr\"odinger equation with symmetric trigonometric double-well potential (DWP) is exactly solved via angular oblate spheroidal function. The results of stringent analytic calculation for the ground state splitting of hydrogen bond in malonaldehyde are compared with several variants of approximate semiclassical (WKB) ones. This enables us to compare the accuracy of various WKB formulas suggested in the literature: 1. ordinary WKB, i.e., the formula from the Landau and Lifshitz textbook; 2. Garg's formula; 3. instanton approach. The results obtained provide a new theoretical tool for the precise quantitative description of experimental data on IR spectroscopy of malonaldehyde.
A theoretical scheme for the analysis of experimental data on IR spectroscopy for a quantum particle in a double well potential (DWP) is suggested. The analysis is based on the trigonometric DWP for which the exact analytic solution of the Schr\"odinger equation is available. The corresponding energy levels along with their wave functions are expressed via special functions implemented in {\sl {Mathematica}} (spheroidal function and its spectrum of eigenvalues). As a result trigonometric DWP makes the calculation of the energy levels an extremely easy procedure. It contains three parameters allowing one to model the most important characteristics of DWP (barrier height and the distance between the minima of the potential) along with the required asymmetry. Our approach provides an accurate calculation of the energy spectrum for hydrogen bonds in chromous acid (CrOOH) and potassium dihydrogen phosphate (${\rm{KH_2PO_4}}$) along with their polarizability in agreement with available experimental data.
The one-dimensional Schr\"odinger equation with symmetric trigonometric double-well potential is exactly solved via angular prolate spheroidal function. Although it is inferior compared with multidimensional counterparts and its limitations are obvious nevertheless its solution is shown to be analytic rather than commonly used numerical or approximate semiclassical (WKB) one. This comprises the novelty and the merit of the present work. Our exact analytic description of the ground state splitting can well be a referee point for comparison of the accuracy of numerous WKB formulas suggested in the literature. The approach reasonably well suits for the inversion mode in the ammonia molecule $NH_3$ and thus yields a new theoretical tool for its description. The results obtained provide good quantitative description of relevant experimental data on microwave and IR spectroscopy of $NH_3$.