Alenka Čopič

Dr. Alenka Čopič

Institut Jacques Monod, CNRS / University of Paris, Paris France
orcid

Research Focus & Metrics

Academic Career Length

29Years (1998-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 July 2015 in Science
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JFJoachim Moser von Filseck
Joachim Moser von Filseck
AČAlenka Čopič
Alenka Čopič
VDVanessa Delfosse
Vanessa Delfosse
SVStefano Vanni
Stefano Vanni
CJCatherine L. Jackson
Catherine L. Jackson
GDGuillaume Drin
Guillaume Drin
Membrane contact sites promote lipid exchange: Most membrane lipids are manufactured in the endoplasmic reticulum (ER). Different organelles and the plasma membrane (PM) have distinct phospholipid compositions. Chung et al. , working in mammalian cells, and Moser von Filseck et al. , working in yeast, both describe how a family of proteins is important in maintaining the balance of lipids within the cell. These special proteins accumulate at and tether contact sites between the ER and the PM and promote the exchange of specific phospholipids, which helps to maintain the PM's distinct identity. Science , this issue pp. 428 and 432

5 July 2018 in Biomolecules
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MGManuel Giménez-Andrés
Manuel Giménez-Andrés
AČAlenka Čopič
Alenka Čopič
BABruno Antonny
Bruno Antonny
Amphipathic helices (AHs), a secondary feature found in many proteins, are defined by their structure and by the segregation of hydrophobic and polar residues between two faces of the helix. This segregation allows AHs to adsorb at polar–apolar interfaces such as the lipid surfaces of cellular organelles. Using various examples, we discuss here how variations within this general scheme impart membrane-interacting AHs with different interfacial properties. Among the key parameters are: (i) the size of hydrophobic residues and their density per helical turn; (ii) the nature, the charge, and the distribution of polar residues; and (iii) the length of the AH. Depending on how these parameters are tuned, AHs can deform lipid bilayers, sense membrane curvature, recognize specific lipids, coat lipid droplets, or protect membranes from stress. Via these diverse mechanisms, AHs play important roles in many cellular processes.

1 July 2017 in Trends in Biochemical Sciences
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LWLouise H. Wong
Louise H. Wong
AČAlenka Čopič
Alenka Čopič
TLTim P. Levine
Tim P. Levine
Transfer of lipid across the cytoplasm is an essential process for intracellular lipid traffic. Lipid transfer proteins (LTPs) are defined by highly controlled in vitro experiments. The functional relevance of these is supported by evidence for the same reactions inside cells. Major advances in the LTP field have come from structural bioinformatics identifying new LTPs, and from the development of countercurrent models for LTPs. However, the ultimate aim is to unite in vitro and in vivo data, and this is where much progress remains to be made. Even where in vitro and in vivo experiments align, rates of transfer tend not to match. Here we set out some of the advances that might test how LTPs work.

16 March 2012 in Science
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AČAlenka Čopič
Alenka Čopič
CLCatherine F. Latham
Catherine F. Latham
MHMax A. Horlbeck
Max A. Horlbeck
JDJennifer G. D’arcangelo
Jennifer G. D’arcangelo
EMElizabeth A. Miller
Elizabeth A. Miller
A Fair COP: During eukaryotic intracellular membrane traffic, how is membrane curvature imparted by the cytoplasmic proteins that form the COPII coat, which mediates vesicle budding from the endoplasmic reticulum? Čopič et al. (p. 1359 , published online 2 February; see the Perspective by Silvius ) dissected this process by exploiting yeast bypass-of-sec-thirteen ( bst ) mutants, which can survive without the otherwise essential COPII coat protein. These bst mutants appear to create a locally altered membrane that is more amenable to deformation by a Sec13-free coat.

6 April 2018 in Nature Communications
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AČAlenka Čopič
Alenka Čopič
SASandra Antoine-Bally
Sandra Antoine-Bally
MGManuel Giménez-Andrés
Manuel Giménez-Andrés
CGCésar La Torre Garay
César La Torre Garay
BABruno Antonny
Bruno Antonny
CJCatherine L. Jackson
Catherine L. Jackson
How proteins are targeted to lipid droplets (LDs) and distinguish the LD surface from the surfaces of other organelles is poorly understood, but many contain predicted amphipathic helices (AHs) that are involved in targeting. We have focused on human perilipin 4 (Plin4), which contains an AH that is exceptional in terms of length and repetitiveness. Using model cellular systems, we show that AH length, hydrophobicity, and charge are important for AH targeting to LDs and that these properties can compensate for one another, albeit at a loss of targeting specificity. Using synthetic lipids, we show that purified Plin4 AH binds poorly to lipid bilayers but strongly interacts with pure triglycerides, acting as a coat and forming small oil droplets. Because Plin4 overexpression alleviates LD instability under conditions where their coverage by phospholipids is limiting, we propose that the Plin4 AH replaces the LD lipid monolayer, for example during LD growth.

1 January 2024 in FEBS Letters
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EGElena Griseti
Elena Griseti
ABAbdoul Akim Bello
Abdoul Akim Bello
EBEric Bieth
Eric Bieth
BSBayane Sabbagh
Bayane Sabbagh
JIJason S. Iacovoni
Jason S. Iacovoni
AČAlenka Čopič
Alenka Čopič
Perilipins are abundant lipid droplet (LD) proteins present in all metazoans and also in Amoebozoa and fungi. Humans express five perilipins, which share a similar domain organization: an amino‐terminal PAT domain and an 11‐mer repeat region, which can fold into amphipathic helices that interact with LDs, followed by a structured carboxy‐terminal domain. Variations of this organization that arose during vertebrate evolution allow for functional specialization between perilipins in relation to the metabolic needs of different tissues. We discuss how different features of perilipins influence their interaction with LDs and their cellular targeting. PLIN1 and PLIN5 play a direct role in lipolysis by regulating the recruitment of lipases to LDs and LD interaction with mitochondria. Other perilipins, particularly PLIN2, appear to protect LDs from lipolysis, but the molecular mechanism is not clear. PLIN4 stands out with its long repetitive region, whereas PLIN3 is most widely expressed and is used as a nascent LD marker. Finally, we discuss the genetic variability in perilipins in connection with metabolic disease, prominent for PLIN1 and PLIN4, underlying the importance of understanding the molecular function of perilipins.