Summary: The multi‐heme, outer membrane c ‐type cytochrome ( c ‐ C yt) OmcB of Geobacter sulfurreducens was previously proposed to mediate electron transfer across the outer membrane. However, the underlying mechanism has remained uncharacterized. In G. sulfurreducens , the omcB gene is part of two tandem four‐gene clusters, each is predicted to encode a transcriptional factor ( OrfR / OrfS ), a porin‐like outer membrane protein ( OmbB / OmbC ), a periplasmic c‐ type cytochrome ( OmaB / OmaC ) and an outer membrane c ‐ C yt ( OmcB / OmcC ) respectively. Here, we showed that OmbB / OmbC , OmaB / OmaC and OmcB / OmcC of G. sulfurreducens PCA formed the porin‐cytochrome ( P cc) protein complexes, which were involved in transferring electrons across the outer membrane. The isolated P cc protein complexes reconstituted in proteoliposomes transferred electrons from reduced methyl viologen across the lipid bilayer of liposomes to F e( III )‐citrate and ferrihydrite. The pcc clusters were found in all eight sequenced Geobacter and 11 other bacterial genomes from six different phyla, demonstrating a widespread distribution of P cc protein complexes in phylogenetically diverse bacteria. Deletion of ombB‐omaB‐omcB‐orfS‐ombC‐omaC‐omcC gene clusters had no impact on the growth of G. sulfurreducens PCA with fumarate but diminished the ability of G. sulfurreducens PCA to reduce F e( III )‐citrate and ferrihydrite. Complementation with the ombB‐omaB‐omcB gene cluster restored the ability of G. sulfurreducens PCA to reduce F e( III )‐citrate and ferrihydrite.
22 April 2019 in Proceedings of the National Academy of Sciences
Significance: In solar-terrestrial systems, solar energy input has long been recognized to have a profound impact on Earth. The well-known photosynthetic systems enable sustainable solar-to-chemical energy conversion. However, no evidence has yet emerged for the existence of a widespread geological light-harvesting system. This study reveals such a “photoelectric device,” where semiconducting Fe- and Mn (oxyhydr)oxide-mineral coatings are found to overlay vast expanses of natural rock/soil surfaces and exhibit highly responsive and stable photon-to-electron conversion. Our discovery may provide insight supporting vital photon-induced redox chemistry on Earth’s surface via widespread Fe- and Mn-mineral coatings.
The Gram-negative bacterium Sideroxydans lithotrophicus ES-1 (ES-1) grows on FeCO3 or FeS at oxic–anoxic interfaces at circumneutral pH, and the ES-1-mediated Fe(II) oxidation occurs extracellularly. However, the molecular mechanisms underlying ES-1’s ability to oxidize Fe(II) remain unknown. Survey of the ES-1 genome for candidate genes for microbial extracellular Fe(II) oxidation revealed that it contained a three-gene cluster encoding homologs of Shewanella oneidensis MR-1 (MR-1) MtrA, MtrB, and CymA that are involved in extracellular Fe(III) reduction. Homologs of MtrA and MtrB were also previously shown to be involved in extracellular Fe(II) oxidation by Rhodopseudomonas palustris TIE-1. To distinguish them from those found in MR-1, the identified homologs were named MtoAB and CymAES-1. Cloned mtoA partially complemented an MR-1 mutant without MtrA with regards to ferrihydrite reduction. Characterization of purified MtoA showed that it was a decaheme c-type cytochrome and oxidized soluble Fe(II). Oxidation of Fe(II) by MtoA was pH- and Fe(II)-complexing ligand-dependent. Under conditions tested, MtoA oxidized Fe(II) from pH 7 to pH 9 with the optimal rate at pH 9. MtoA oxidized Fe(II) complexed with different ligands at different rates. The reaction rates followed the order Fe(II)Cl2 > Fe(II)–citrate > Fe(II)–NTA > Fe(II)–EDTA with the second-order rate constants ranging from 6.3 × 10−3 μM−1 s−1 for oxidation of Fe(II)Cl2 to 1.0 × 10−3 μM−1 s−1 for oxidation of Fe(II)–EDTA. Thermodynamic modeling showed that redox reaction rates for the different Fe(II)-complexes correlated with their respective estimated reaction-free energies. Collectively, these results demonstrate that MtoA is a functional Fe(II)-oxidizing protein that, by working in concert with MtoB and CymAES-1, may oxidize Fe(II) at the bacterial surface and transfer released electrons across the bacterial cell envelope to the quinone pool in the inner membrane during extracellular Fe(II) oxidation by ES-1.