Stefan Philipp Haider

Dr. Stefan Philipp Haider


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 July 2020 in Cancers
Verified
Journal Article
Open access
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SHStefan Philipp Haider
Stefan Philipp Haider
TZTal Zeevi
Tal Zeevi
PBPhilipp Baumeister
Philipp Baumeister
CRChristoph A. Reichel
Christoph A. Reichel
KSKariem Sharaf
Kariem Sharaf
Sam PayabvashSam Payabvash
Sam Payabvash
Accurate risk-stratification can facilitate precision therapy in oropharyngeal squamous cell carcinoma (OPSCC). We explored the potential added value of baseline positron emission tomography (PET)/computed tomography (CT) radiomic features for prognostication and risk stratification of OPSCC beyond the American Joint Committee on Cancer (AJCC) 8th edition staging scheme. Using institutional and publicly available datasets, we included OPSCC patients with known human papillomavirus (HPV) status, without baseline distant metastasis and treated with curative intent. We extracted 1037 PET and 1037 CT radiomic features quantifying lesion shape, imaging intensity, and texture patterns from primary tumors and metastatic cervical lymph nodes. Utilizing random forest algorithms, we devised novel machine-learning models for OPSCC progression-free survival (PFS) and overall survival (OS) using “radiomics” features, “AJCC” variables, and the “combined” set as input. We designed both single- (PET or CT) and combined-modality (PET/CT) models. Harrell’s C-index quantified survival model performance; risk stratification was evaluated in Kaplan–Meier analysis. A total of 311 patients were included. In HPV-associated OPSCC, the best “radiomics” model achieved an average C-index ± standard deviation of 0.62 ± 0.05 (p = 0.02) for PFS prediction, compared to 0.54 ± 0.06 (p = 0.32) utilizing “AJCC” variables. Radiomics-based risk-stratification of HPV-associated OPSCC was significant for PFS and OS. Similar trends were observed in HPV-negative OPSCC. In conclusion, radiomics imaging features extracted from pre-treatment PET/CT may provide complimentary information to the current AJCC staging scheme for survival prognostication and risk-stratification of HPV-associated OPSCC.

1 January 2021 in Translational Oncology
Verified
Journal Article
Open access
SHStefan Philipp Haider
Stefan Philipp Haider
KSKariem Sharaf
Kariem Sharaf
TZTal Zeevi
Tal Zeevi
PBPhilipp Baumeister
Philipp Baumeister
CRChristoph Reichel
Christoph Reichel
Sam PayabvashSam Payabvash
Sam Payabvash
• Radiomics quantitatively captures visually inappreciable imaging features. • PET/CT radiomics provides wholistic metabolic and structural tumor characterization. • Machine-learning algorithms can generate radiomics-based biomarkers for OPSCC. • PET/CT radiomics can predict post-radiotherapy locoregional progression in HPV-associated OPSCC. • Such biomarkers may improve patient selection for treatment de-intensification trials.

18 July 2021 in European Journal of Neurology
Verified
Journal Article
Closed access
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SHStefan Philipp Haider
Stefan Philipp Haider
AQAdnan I. Qureshi
Adnan I. Qureshi
AJAbhi Jain
Abhi Jain
HTHishan Tharmaseelan
Hishan Tharmaseelan
EBElisa R. Berson
Elisa R. Berson
Sam PayabvashSam Payabvash
Sam Payabvash

1 December 2021 in PLOS ONE
Verified
Journal Article
Open access
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MGMoritz Gross
Moritz Gross
MSMichael Spektor
Michael Spektor
AJAriel Jaffe
Ariel Jaffe
AKAhmet S. Kucukkaya
Ahmet S. Kucukkaya
SISimon Iseke
Simon Iseke
JOJohn A. Onofrey
John A. Onofrey
Purpose: Accurate liver segmentation is key for volumetry assessment to guide treatment decisions. Moreover, it is an important pre-processing step for cancer detection algorithms. Liver segmentation can be especially challenging in patients with cancer-related tissue changes and shape deformation. The aim of this study was to assess the ability of state-of-the-art deep learning 3D liver segmentation algorithms to generalize across all different Barcelona Clinic Liver Cancer (BCLC) liver cancer stages. Methods: This retrospective study, included patients from an institutional database that had arterial-phase T1-weighted magnetic resonance images with corresponding manual liver segmentations. The data was split into 70/15/15% for training/validation/testing each proportionally equal across BCLC stages. Two 3D convolutional neural networks were trained using identical U-net-derived architectures with equal sized training datasets: one spanning all BCLC stages (“All-Stage-Net": AS-Net), and one limited to early and intermediate BCLC stages (“Early-Intermediate-Stage-Net": EIS-Net). Segmentation accuracy was evaluated by the Dice Similarity Coefficient (DSC) on a dataset spanning all BCLC stages and a Wilcoxon signed-rank test was used for pairwise comparisons. Results: 219 subjects met the inclusion criteria (170 males, 49 females, 62.8±9.1 years) from all BCLC stages. Both networks were trained using 129 subjects: AS-Net training comprised 19, 74, 18, 8, and 10 BCLC 0, A, B, C, and D patients, respectively; EIS-Net training comprised 21, 86, and 22 BCLC 0, A, and B patients, respectively. DSCs (mean±SD) were 0.954±0.018 and 0.946±0.032 for AS-Net and EIS-Net (p<0.001), respectively. The AS-Net 0.956±0.014 significantly outperformed the EIS-Net 0.941±0.038 on advanced BCLC stages (p<0.001) and yielded similarly good segmentation performance on early and intermediate stages (AS-Net: 0.952±0.021; EIS-Net: 0.949±0.027; p = 0.107). Conclusion: To ensure robust segmentation performance across cancer stages that is independent of liver shape deformation and tumor burden, it is critical to train deep learning models on heterogeneous imaging data spanning all BCLC stages.

6 March 2023 in Stroke and Vascular Neurology
Verified
Journal Article
Open access
PDF file
JAJulián N Acosta
Julián N Acosta
SHStefan Philipp Haider
Stefan Philipp Haider
CRCyprien Rivier
Cyprien Rivier
ALAudrey C Leasure
Audrey C Leasure
KSKevin N Sheth
Kevin N Sheth
Sam PayabvashSam Payabvash
Sam Payabvash
Background and objectives We aimed to investigate the white matter (WM) microstructural/cytostructural disintegrity patterns related to higher systolic blood pressure (SBP), and whether they mediate SBP effects on cognitive performance in middle-aged adults. Methods Using the UK Biobank study of community-dwelling volunteers aged 40–69 years, we included participants without a history of stroke, dementia, demyelinating disease or traumatic brain injury. We investigated the association of SBP with MRI diffusion metrics: fractional anisotropy (FA), mean diffusivity (MD), intracellular volume fraction (a measure of neurite density), isotropic (free) water volume fraction (ISOVF) and orientation dispersion across WM tracts. Then, we determined whether WM diffusion metrics mediated the effects of SBP on cognitive function. Results We analysed 31 363 participants—mean age of 63.8 years (SD: 7.7), and 16 523 (53%) females. Higher SBP was associated with lower FA and neurite density, but higher MD and ISOVF. Among different WM tracts, diffusion metrics of the internal capsule anterior limb, external capsule, superior and posterior corona radiata were most affected by higher SBP. Among seven cognitive metrics, SBP levels were only associated with ‘fluid intelligence’ (adjusted p<0.001). In mediation analysis, the averaged FA of external capsule, internal capsule anterior limb and superior cerebellar peduncle mediated 13%, 9% and 13% of SBP effects on fluid intelligence, while the averaged MD of external capsule, internal capsule anterior and posterior limbs, and superior corona radiata mediated 5%, 7%, 7% and 6% of SBP effects on fluid intelligence, respectively. Discussion Among asymptomatic adults, higher SBP is associated with pervasive WM microstructure disintegrity, partially due to reduced neuronal count, which appears to mediate SBP adverse effects on fluid intelligence. Diffusion metrics of select WM tracts, which are most reflective of SBP-related parenchymal damage and cognitive impairment, may serve as imaging biomarkers to assess treatment response in antihypertensive trials.

19 July 2021 in Current Oncology
Verified
Journal Article
Open access
PDF file
KSKariem Sharaf
Kariem Sharaf
ALAxel Lechner
Axel Lechner
SHStefan Philipp Haider
Stefan Philipp Haider
RWRobert Wiebringhaus
Robert Wiebringhaus
CWChristoph Walz
Christoph Walz
PBPhilipp Baumeister
Philipp Baumeister
Cancer stem cells (CSCs) are accountable for the progress of head and neck squamous cell carcinoma (HNSCC). This exploratory study evaluated the expression of molecular CSC markers in different tissues of HNSCC patients. Tissue specimens of primary tumor, lymph node metastases and macroscopically healthy mucosa of 12 consecutive HNSCC patients, that were treated with surgery and adjuvant radio(chemo)therapy upon indication, were collected. Samples were assessed for the expression of p16 as a surrogate for HPV-related disease and different molecular stem cell markers (ALDH1A1, BCL11B, BMI-1, and CD44). In the cohort, seven patients had HPV-related HNSCC; six thereof were oropharyngeal squamous cell carcinoma. While expression of BMI-1 and BCL11B was significantly lower in healthy mucosa than both tumor and lymph node metastasis, there were no differences between tumor and lymph node metastasis. In the HPV-positive sub-cohort, these differences remained significant for BMI-1. However, no significant differences in these three tissues were found for ALDH1A1 and CD44. In conclusion, this exploratory study shows that CSC markers BMI-1 and BCL11B discriminate between healthy and cancerous tissue, whereas ALDH1A1 and CD44 were expressed to a comparable extent in healthy mucosa and cancerous tissues.