Plasmodium vivax malaria continues to pose a significant and enduring public health challenge across the Americas. Transmission-blocking vaccines (TBVs), which target gametocyte surface antigens such as Pvs47 and Pvs48/45, are being investigated as promising tools to interrupt transmission and advance toward disease elimination. To investigate the genetic diversity and phylogeographic structure of the pvs47 and pvs48/45 genes in P. vivax, we conducted molecular analyses on samples collected from seven malaria-endemic regions of Honduras using PCR-based sequencing, population genetics, and phylogenetic approaches. This study presents the first complete characterization of the pvs47 gene and expands the available data on pvs48/45 in P. vivax from Honduras. We observed a low level of genetic diversity with no evidence of geographic structuring within the country. At a global scale, Honduran sequences shared variants with other Latin American strains and exhibited region-specific amino acid signatures. These findings suggest that local selective pressures, possibly driven by mosquito vector compatibility, are shaping the evolution of these TBV candidate genes. Our results underscore the importance of regional surveillance to inform the development and deployment of effective transmission-blocking strategies.