Water within coal reservoirs exerts dual effects on methane adsorption–desorption by competing for adsorption sites and reducing permeability. The bound water effect, caused by coal wettability, significantly constrains coalbed methane (CBM) production, rendering investigations into coal wettability crucial for efficient CBM development. Compared with other geological formations, coals are characterized by a highly developed microporous structure, making the CO₂ sequestration mechanism in coal seams closely linked to the microscale interactions among gas, water, and coal matrixes. However, the intrinsic mechanisms remain poorly understood. In this study, molecular dynamics simulations are employed to investigate the wettability behaviors of CO₂, CH₄, and water on different coal matrix surfaces under varying temperature and pressure conditions, for coal macromolecules representative of four coal ranks. The study reveals the evolution of water wettability in response to CO₂ and CH₄ injection, identifies wettability differences among coal ranks, and analyzes the microscopic mechanisms governing wettability. The results show the following: (1) The contact angle increases with gas pressure, and the variation in wettability is more pronounced in CO₂ environments than in CH₄. As pressure increases, the number of hydrogen bonds decreases, while the peak gas density of CH₄ and CO₂ increases, leading to larger contact angles. (2) Simulations under different temperatures for the four coal ranks indicate that temperature has minimal influence on low-rank Hegu coal, whereas for higher-rank coals, gas adsorption on the coal surface increases, resulting in reduced wettability. Interfacial tension analysis further suggests that higher temperatures reduce water surface tension, cause dispersion of water molecules, and consequently improve wettability. Understanding the wettability variations among different coal ranks under variable pressure–temperature conditions provides a fundamental model and theoretical basis for investigating deep coal seam gas–water interactions and CO₂ geological sequestration mechanisms. These findings have significant implications for the advancement of CO₂-ECBM technology.