This paper presents the flow field reconstruction and prediction of powder fuel transport systems based on representative feature extraction from scattering images using deep learning techniques. A laboratory-built powder fuel supply system was used to conduct scattering spectroscopy experiments on boron-based fuel under various flow rate conditions. Based on the acquired scattering images, a prediction and reconstruction method was developed using a deep network framework composed of a Stacked Autoencoder (SAE), a Backpropagation Neural Network (BP), and a Long Short-Term Memory (LSTM) model. The proposed framework enables accurate classification and prediction of the dynamic evolution of flow structures based on learned representations from scattering images. Experimental results show that the feature vectors extracted by the SAE form clearly separable clusters in the latent space, leading to high classification accuracy under varying flow conditions. In the prediction task, the feature vectors predicted by the LSTM exhibit strong agreement with ground truth, with average mean square error, mean absolute error, and r-square values of 0.0027, 0.0398, and 0.9897, respectively. Furthermore, the reconstructed images offer a visual representation of the changing flow field, validating the model’s effectiveness in structure-level recovery. These results suggest that the proposed method provides reliable support for future real-time prediction of powder fuel mass flow rates based on optical sensing and imaging techniques.