Jakub Benda

Dr. Jakub Benda

orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2020 in Computer Physics Communications
Verified
Journal Article
Closed access
ZMZdenek Masin
Zdenek Masin
JBJakub Benda
Jakub Benda
JGJimena D. Gorfinkiel
Jimena D. Gorfinkiel
AHAlex G. Harvey
Alex G. Harvey
JTJonathan Tennyson
Jonathan Tennyson

1 May 2020 in Computer Physics Communications
Verified
Journal Article
Closed access
ABAndrew C. Brown
Andrew C. Brown
GAGregory Armstrong
Gregory Armstrong
JBJakub Benda
Jakub Benda
DCDaniel D.A. Clarke
Daniel D.A. Clarke
JWJack Wragg
Jack Wragg
HHHugo W. van der Hart
Hugo W. van der Hart

20 November 2014 in Optics Express
Verified
Journal Article
Open access
PDF file
TLTomáš Lukeš
Tomáš Lukeš
PKPavel Křížek
Pavel Křížek
ZŠZdeněk Švindrych
Zdeněk Švindrych
JBJakub Benda
Jakub Benda
MOMartin Ovesný
Martin Ovesný
GHGuy M. Hagen
Guy M. Hagen
We introduce and demonstrate a new high performance image reconstruction method for super-resolution structured illumination microscopy based on maximum a posteriori probability estimation (MAP-SIM). Imaging performance is demonstrated on a variety of fluorescent samples of different thickness, labeling density and noise levels. The method provides good suppression of out of focus light, improves spatial resolution, and allows reconstruction of both 2D and 3D images of cells even in the case of weak signals. The method can be used to process both optical sectioning and super-resolution structured illumination microscopy data to create high quality super-resolution images.

17 October 2019 in Atoms
Verified
Journal Article
Open access
PDF file
BCBridgette Cooper
Bridgette Cooper
MTMaria Tudorovskaya
Maria Tudorovskaya
SMSebastian Mohr
Sebastian Mohr
AOAran O’hare
Aran O’hare
MHMartin Hanicinec
Martin Hanicinec
JTJonathan Tennyson
Jonathan Tennyson
Collisions of low energy electrons with molecules are important for understanding many aspects of the environment and technologies. Understanding the processes that occur in these types of collisions can give insights into plasma etching processes, edge effects in fusion plasmas, radiation damage to biological tissues and more. A radical update of the previous expert system for computing observables relevant to these processes, Quantemol-N, is presented. The new Quantemol Electron Collision (QEC) expert system simplifyies the user experience, improving reliability and implements new features. The QEC graphical user interface (GUI) interfaces the Molpro quantum chemistry package for molecular target setups, and the sophisticated UKRmol+ codes to generate accurate and reliable cross-sections. These include elastic cross-sections, super elastic cross-sections between excited states, electron impact dissociation, scattering reaction rates, dissociative electron attachment, differential cross-sections, momentum transfer cross-sections, ionization cross sections, and high energy electron scattering cross-sections. With this new interface we will be implementing dissociative recombination estimations, vibrational excitations for neutrals and ions, and effective core potentials in the near future.

29 August 2022 in Nature Communications
Verified
Journal Article
Open access
PDF file
WJWenyu Jiang
Wenyu Jiang
GAGregory Armstrong
Gregory Armstrong
JTJihong Tong
Jihong Tong
YXYidan Xu
Yidan Xu
ZZZitan Zuo
Zitan Zuo
JWJian Wu
Jian Wu
Attosecond chronoscopy is central to the understanding of ultrafast electron dynamics in matter from gas to the condensed phase with attosecond temporal resolution. It has, however, not yet been possible to determine the timing of individual partial waves, and steering their contribution has been a substantial challenge. Here, we develop a polarization-skewed attosecond chronoscopy serving as a partial wave meter to reveal the role of each partial wave from the angle-resolved photoionization phase shifts in rare gas atoms. We steer the relative ratio between different partial waves and realize a magnetic-sublevel-resolved atomic phase shift measurement. Our experimental observations are well supported by time-dependent R-matrix numerical simulations and analytical soft-photon approximation analysis. The symmetry-resolved, partial-wave analysis identifies the transition rate and phase shift property in the attosecond photoelectron emission dynamics. Our findings provide critical insights into the ubiquitous attosecond optical timer and the underlying attosecond photoionization dynamics.

23 November 2020 in Physical Review A
Verified
Journal Article
Closed access
PDF file
JBJakub Benda
Jakub Benda
JGJ. D. Gorfinkiel
J. D. Gorfinkiel
ZMZdenek Masin
Zdenek Masin
GAGregory Armstrong
Gregory Armstrong
ABA. C. Brown
A. C. Brown
JWJ. Wragg
J. Wragg
The ab initio R-matrix with time method has recently been extended to allow simulation of fully nonperturbative multielectron processes in molecules driven by ultrashort arbitrarily polarized strong laser fields. Here we demonstrate the accuracy and capabilities of the current implementation of the method for two targets: We study single-photon and multiphoton ionization of H2 and one-photon and strong-field ionization of H2O and compare the results to available experimental and theoretical data as well as our own time-independent R-matrix calculations. We obtain a highly accurate description of total and state-to-state single-photon ionization of H2O and, using a simplified coupled-channel model, we show that state coupling is essential to obtain qualitatively correct results and that its importance as a function of laser intensity changes. We find that electron correlation plays a more important role at low intensities (up to approximately 50 TW/cm2).