Evren Degirmenci

Prof. Dr. Evren Degirmenci

orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 November 2007 in Physics in Medicine & Biology
Verified
Journal Article
Closed access
EDEvren Degirmenci
Evren Degirmenci
BEB Murat Eyüboğlu
B Murat Eyüboğlu
Magnetic resonance electrical impedance tomography (MREIT) combines magnetic flux or current density measurements obtained by magnetic resonance imaging (MRI) and surface potential measurements to reconstruct images of true conductivity with high spatial resolution. Most of the biological tissues have anisotropic conductivity; therefore, anisotropy should be taken into account in conductivity image reconstruction. Almost all of the MREIT reconstruction algorithms proposed to date assume isotropic conductivity distribution. In this study, a novel MREIT image reconstruction algorithm is proposed to image anisotropic conductivity. Relative anisotropic conductivity values are reconstructed iteratively, using only current density measurements without any potential measurement. In order to obtain true conductivity values, only either one potential or conductivity measurement is sufficient to determine a scaling factor. The proposed technique is evaluated on simulated data for isotropic and anisotropic conductivity distributions, with and without measurement noise. Simulation results show that the images of both anisotropic and isotropic conductivity distributions can be reconstructed successfully.

22 May 2020 in Biomedical Engineering / Biomedizinische Technik
Verified
Journal Article
Closed access
PDF file
HYHuseyin Yanik
Huseyin Yanik
EDEvren Degirmenci
Evren Degirmenci
BBBelgin Büyükakıllı
Belgin Büyükakıllı
DKDerya Karpuz
Derya Karpuz
OKOlgu Hallıoğlu Kılınç
Olgu Hallıoğlu Kılınç
SGSerkan GÜRGÜL
Serkan GÜRGÜL
Electrocardiography (ECG) signals and the information obtained through the analysis of these signals constitute the main source of diagnosis for many cardiovascular system diseases. Therefore, accurate analyses of ECG signals are very important for correct diagnosis. In this study, an ECG analysis toolbox together with a user-friendly graphical user interface, which contains the all ECG analysis steps between the recording unit and the statistical investigation, is developed. Furthermore, a new feature calculation methodology is proposed for ECG analysis, which carries distinct information than amplitudes and durations of ECG main waves and can be used in artificial intelligence studies. Developed toolbox is tested using both Massachusetts Institute of Technology-Beth Israel Hospital (MIT-BIH) Arrhythmia ECG Database and an experimentally collected dataset for performance evaluation. The results show that ECG analysis toolbox presented in this study increases the accuracy and reliability of the ECG main wave detection analysis, highly fasten the process duration compared to manual ones and the new feature set can be used as a new parameter for decision support systems about ECG based on artificial intelligence.

11 December 2012 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
EDEvren Degirmenci
Evren Degirmenci
BEB. Murat Eyuboglu
B. Murat Eyuboglu
Magnetic resonance conductivity tensor imaging (MRCTI) is an emerging modality which reconstructs images of anisotropic conductivity distribution within a volume conductor. Images are reconstructed based on magnetic flux density distribution induced by an externally applied probing current, together with a resultant surface potential value. The induced magnetic flux density distribution is measured using magnetic resonance current density imaging techniques. In this study, MRCTI data acquisition is experimentally implemented and anisotropic conductivity images of test phantoms are reconstructed using recently proposed MRCTI reconstruction algorithms.

10 October 2011 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
EDEvren Degirmenci
Evren Degirmenci
BEB. Murat Eyuboglu
B. Murat Eyuboglu
Almost all magnetic resonance electrical impedance tomography (MREIT) reconstruction algorithms proposed to date assume isotropic conductivity in order to simplify the image reconstruction. However, it is well known that most of biological tissues have anisotropic conductivity values. In this study, four novel anisotropic conductivity reconstruction algorithms are proposed to reconstruct high resolution conductivity tensor images. Performances of these four algorithms and a previously proposed algorithm are evaluated in several aspects and compared.

3 August 2021 in Medical & Biological Engineering & Computing
Verified
Journal Article
Closed access
PDF file
HYHüseyin Yanık
Hüseyin Yanık
EDEvren Degirmenci
Evren Degirmenci
BBBelgin Büyükakıllı
Belgin Büyükakıllı

8 June 2012 in Physics in Medicine & Biology
Verified
Journal Article
Closed access
VAV E Arpinar
V E Arpinar
MHM J Hamamura
M J Hamamura
EDEvren Degirmenci
Evren Degirmenci
LML T Muftuler
L T Muftuler
Magnetic resonance electrical impedance tomography (MREIT) is a technique that produces images of conductivity in tissues and phantoms. In this technique, electrical currents are applied to an object and the resulting magnetic flux density is measured using magnetic resonance imaging (MRI) and the conductivity distribution is reconstructed using these MRI data. Currently, the technique is used in research environments, primarily studying phantoms and animals. In order to translate MREIT to clinical applications, strict safety standards need to be established, especially for safe current limits. However, there are currently no standards for safe current limits specific to MREIT. Until such standards are established, human MREIT applications need to conform to existing electrical safety standards in medical instrumentation, such as IEC601. This protocol limits patient auxiliary currents to 100 µA for low frequencies. However, published MREIT studies have utilized currents 10-400 times larger than this limit, bringing into question whether the clinical applications of MREIT are attainable under current standards. In this study, we investigated the feasibility of MREIT to accurately reconstruct the relative conductivity of a simple agarose phantom using 200 µA total injected current and tested the performance of two MREIT reconstruction algorithms. These reconstruction algorithms used are the iterative sensitivity matrix method (SMM) by Ider and Birgul (1998 Elektrik 6 215-25) with Tikhonov regularization and the harmonic B(Z) proposed by Oh et al (2003 Magn. Reason. Med. 50 875-8). The reconstruction techniques were tested at both 200 µA and 5 mA injected currents to investigate their noise sensitivity at low and high current conditions. It should be noted that 200 µA total injected current into a cylindrical phantom generates only 14.7 µA current in imaging slice. Similarly, 5 mA total injected current results in 367 µA in imaging slice. Total acquisition time for 200 µA and 5 mA experiments was about 1 h and 8.5 min, respectively. The results demonstrate that conductivity imaging is possible at low currents using the suggested imaging parameters and reconstructing the images using iterative SMM with Tikhonov regularization, which appears to be more tolerant to noisy data than harmonic B(Z).