Unauthorized fossil trafficking violates national legislation and deprives cultural and natural heritage. This study proposes a pilot method to fingerprint the origin of fossils by characterizing the carbon and oxygen stable isotope signatures of fossil-bearing limestones to provide a non-destructive quantitative tool against illegal fossil trade. This promising approach has been applied to the Crato Formation (NE Brazil), which is a renowned Lower Cretaceous fossiliferous lacustrine limestone. This study aims at establishing the range of isotopic oxygen (δ¹⁸O) and carbon (δ¹³C) values of the Crato Formation’s laminated calci-mudstone by compiling isotopic data from previous studies, conducting new analyses, and comparing with other fossiliferous lacustrine limestones from Brazil (Cretaceous Codó Formation) and the USA (Eocene Green River Formation). This preliminary evaluation determined a distinctive isotopic signature of the Crato Formation fossil-bearing “sete cortes” (“seven cuts”) ethnostratum, with VPDB δ¹⁸O and δ¹³C arithmetic means of −5.94‰ and +0.90‰, standard deviations 0.76‰ and 0.61‰, medians of −5.89‰ and +0.73‰, and interquartile ranges of 1.47‰ and 1.24‰, respectively. This pilot investigation establishes a methodological groundwork for the development of a global database integrating lithofacies and geochemical parameters of fossil-bearing limestones to expedite the identification and restitution of illegally extracted paleontological heritage.