Outbreaks of hemorrhagic septicemia (HS) caused by Pasteurella multocida serogroup B are endemic in Kazakhstan. These outbreaks have repeatedly led to mass mortality events among wild saigas and economic losses to farms. The aim of this study was to conduct the first whole-genome sequencing (WGS) and analysis of P. multocida genomes associated with HS cases in saigas and livestock in Kazakhstan. In this study, WGS was performed on 22 P. multocida isolates obtained from saigas and livestock. A comparative genomic analysis of P. multocida isolates from Kazakhstan and publicly available genomes was performed. All isolates belonged to the B:2:ST122 genotype and formed distinct phylogenetic clusters based on outbreaks in saiga populations and livestock. Clustering also corresponded to identified mutations in virulence genes. Isolates recovered from the 2015 mass mortality of saigas in the Betpak-Dala population were found to have a deletion of the flp1 gene. This observation emphasizes the study of the role of Flp pili in HS pathogenesis. Comparison of the P. multocida B:L2:ST122 genomes revealed low virulence gene diversity and an open pangenome. Prophage annotation did not identify virulence or pathogenicity genes. The obtained results will be useful for future studies of HS pathogenesis.

Background and Aim: Salmonella Abortusequi is a significant etiological agent of equine abortions, yet limited genomic data exist, particularly in Central Asia. This study aimed to perform the first genome-wide characterization and phylogenetic analysis of three S. Abortusequi strains isolated from equine abortions in different regions of Kazakhstan. Materials and Methods: Whole-genome sequencing was conducted on three isolates using the Illumina MiSeq platform. Genomic assemblies were annotated using SPAdes and Prokka, while phenotypic traits were predicted through BioNumerics. Antimicrobial resistance genes, virulence factors, and prophage elements were identified using established databases. Phylogenetic relationships were examined through whole-genome single-nucleotide polymorphism (wgSNP) analysis against a global panel of S. Abortusequi and related serovars. Results: All isolates displayed high genomic similarity and were classified as Salmonella enterica subsp. enterica serovar Abortusequi with an antigenic profile of 4:a:e,n,x. Twelve Salmonella pathogenicity islands and three prophages were identified, with ST64B present in all isolates. The ac(6’)-Iaa gene, which confers resistance to aminoglycosides, was detected in all strains. Each genome encoded 101–109 virulence factors, with 94 conserved across isolates. wgSNP analysis confirmed close phylogenetic clustering of the Kazakh strains, with regional variation between northern and southern isolates. Prophage-associated virulence elements, particularly virulence factor protein (SseK), were also documented. Conclusion: This study reveals the genetic uniformity and virulence potential of S. Abortusequi strains circulating in Kazakhstan. The presence of conserved resistance and virulence genes, including prophage-encoded elements, underscores the pathogenic risk posed by these isolates. These findings contribute valuable genomic data for surveillance, diagnosis, and control of salmonellosis in equine populations. Despite the limited sample size, the study establishes a foundation for future genomic epidemiological studies and targeted disease mitigation strategies. Keywords: Antimicrobial resistance, equine abortion, Kazakhstan, pathogenicity islands, phylogenomics, Salmonella Abortusequi, whole-genome sequencing.

Background and Aim. In line with the One Health concept, which recognizes the interconnectedness of human, animal, and ecosystem health, the global burden of rabies remains relevant given the current increase in zoonotic and vector borne diseases. For successful rabies control, monitoring the changing patterns of infection spread is vital. This paper is devoted to the spatial analysis of the spread of rabies among animals in Kazakhstan. Materials and Methods. The Spatial Autocorrelation (Moran’s I) and Anselin Local Moran’s I statistics of the Geoprocessing tool in ArcGIS Pro were used. Results. Several types of spatial distribution were noted: clusters in the northeast, south, and west of the country; sparse type in the border areas of the north and northwest; and random distribution in the central and southwestern regions. High-Low Outliers indicating sporadic outbreaks of rabies caused by the migration of infected animals, as well as Low-High Outliers indicating the containment of the epizootic due to preventive measures or natural barriers were also revealed. Conclusion. The study highlights the need to strengthen control over the spread of rabies, implement measures to prevent the migration of infected animals, and optimize vaccination and monitoring programs. The use of spatial analysis methods allows us to identify epidemiological patterns and develop effective strategies to combat the disease in regions with different risk levels.

Background and Aim. Abortion associated with equine salmonellosis is an infectious disease that significantly affects the productivity of herd-based horse breeding in the Republic of Kazakhstan. The disease is characterized by late term abortions and is associated with considerable economic losses in the agricultural sector. The aim of this study was to detect Salmonella DNA using molecular genetic methods. Materials and Methods. The study was based on pathological material collected from horses in nine regions of Kazakhstan during the period from 2023 to 2025. Results. PCR analysis revealed that the proportion of positive samples ranged from 25% to 33.3%, depending on the year. Enzyme-linked immunosorbent assay (ELISA) of 309 equine serum samples detected antibodies to Salmonella abortus equi in 29 cases (10.6%). Microbiological investigations using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) confirmed the presence of Salmonella spp., as well as opportunistic microorganisms such as Enterobacter hormaechei, Pantoea agglomerans, and Escherichia hermannii. Conclusion. The obtained results confirm the circulation of the pathogen among horses and emphasize the need for ongoing epizootiological surveillance. Furthermore, they highlight the importance of continued molecular and genetic studies, including whole genome sequencing, to enhance understanding of the disease’s epidemiology and to optimize preventive measures.

Background and Aim. Feline leukemia virus (FeLV) is one of the most important retroviral pathogens in domestic cats, causing immunosuppression, anemia, lymphoma, and leukemia. FeLV exists in two forms: exogenous (exFeLV), which is infectious and horizontally transmitted, and endogenous (enFeLV), which is inherited as integrated proviral sequences. Differentiating between these forms is essential for accurate epidemiological assessment and diagnostics, since enFeLV sequences can interfere with molecular assays and lead to false-positive results. This study aimed to evaluate the prevalence of endogenous FeLV sequences in domestic cats in Astana and to determine whether exogenous FeLV was actively circulating in this population. Materials and Methods. A total of 203 whole-blood samples from domestic cats were collected during routine veterinary examinations, and genomic DNA was extracted using a modified Kanai method. Two independent real-time PCR systems were employed: primers targeting the conserved env region to detect enFeLV, and primers specific to the U3 region of the long terminal repeat (LTR) to identify exFeLV. Amplifications were performed on the CFX96 Touch platform, and samples with quantification cycle (Cq) values <40 were interpreted as positive. Results. Of the 203 analyzed samples, 197 (97%) were positive for enFeLV sequences, confirming the widespread presence of endogenous retroviral elements in the genome of cats, while no amplification was detected with U3-specific primers, indicating the absence of active exFeLV infection. The Cq values for enFeLV-positive samples ranged from 11.24 to 37.04, reflecting variability in proviral copy number among individuals. These findings demonstrate that enFeLV is nearly ubiquitous among domestic cats in Astana, while no evidence of exFeLV circulation was detected. Conclusion. The results underscore the importance of using U3-LTR specific assays to reliably differentiate endogenous from exogenous forms of FeLV and to avoid false-positive diagnoses. Further studies should focus on monitoring potential recombination events between enFeLV and exFeLV, evaluating the expression of endogenous loci, and assessing their role in disease pathogenesis.

Anelloviruses have a broad mammalian host range, including Torque teno felis virus (FcTTV), a felid-associated member that remains undercharacterized. This is the first comprehensive study of FcTTV in domestic cats in Central Asia. We analyzed blood samples from 206 domestic cats from the large city of Astana, Kazakhstan, collected in 2023–2024. Using nested PCR we identified 63 FcTTV-positive samples (30.6% prevalence), and the sequences were compared to global reference strains. Potential demographic associations (sex and age) were assessed. The study revealed an overall FcTTV prevalence of 30.6%. Infection rates showed no significant sex-related differences: ages varied 4–168 months. ORF1 sequencing revealed multiple FcTTV variants in 27% of samples, with no demographic links. Phylogenetic analysis revealed distinct patterns at both nucleotide and amino acid levels: 3 groups of nucleotide sequences (max divergence 21.68%; intra-cluster 5.15–6.8%), and 3 clusters of amino acid sequences (max divergence 16.81%; intra-cluster 2.82–6.68%). Deletions were found in ORF1 in some variants. Global phylogeny aligned clusters with Asian/European strains (90–98% identity), confirming FcTTV1 affiliation and inter-regional transmission. Our study of FcTTV in Kazakhstan reveals moderate virus prevalence with considerable genetic diversity across viral strains and frequent co-infections with multiple variants.