Aurantiochytrium sp. PKU#SW7 is a thraustochytrid strain that was found to exhibit high potential for docosahexaenoic acid (DHA, C22:6n-3) production. In this work, the transcriptome of Aurantiochytrium sp. PKU#SW7 was analyzed for the study of genes involved in basic metabolic functions and especially in the mechanisms of DHA biosynthesis. Sequence annotation and functional analysis revealed that the strain contains components of fatty acid synthesis (FAS) and polyketide synthase (PKS) pathways. Fatty acid desaturases and elongases were identified as components of FAS pathway, whilst key components of PKS pathway were also found in the cDNA library. The relative contribution of the two pathways to the synthesis of DHA was unknown, as both pathways appeared to be lacking full complement of genes for standalone synthesis of DHA. Further analysis of two putative genes encoding the very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase and dehydrase/isomerase involved in FAS and PKS pathways, respectively, revealed that under various salinity conditions, their relative expression levels changed corresponding to the variation of DHA content in Aurantiochytrium sp. Independent knock outs of these genes in Aurantiochytrium sp. resulted in poor cell growth, probably due to little or no intracellular DHA accumulation. Hence, it can be speculated that both genes are engaged in DHA biosynthesis and DHA in Aurantiochytrium sp. could be produced by jointed actions of both FAS and PKS systems.

Phytoplankton diversity and community characteristics are closely associated with aquatic environmental factors. Understanding these dynamics can provide insights into the ecological health of water bodies. We investigate the spatial and temporal characteristics of phytoplankton communities in 27 drinking water source reservoirs in Shenzhen, China. As a method, we collected samples during the dry season in 2021 and the wet season in 2022, analyzed the alpha and beta diversities of phytoplankton communities, and correlated these with the environmental factors. The results reveal that Cyanobacteria dominate the phytoplankton communities in the Shenzhen reservoirs. Phytoplankton diversity is greater during the dry season. The algal composition varies spatially, and the phytoplankton diversity tends to decrease with increasing eutrophication. A co-occurrence network analysis indicates denser and stronger correlations among phytoplankton nodes during the wet season than dry season. Reservoirs with moderate eutrophication levels exhibit denser nodes and stronger correlations compared to those with low or high eutrophication levels. The chemical oxygen demand, water temperature, pH, and total nitrogen are identified as key influencers of the phytoplankton community structure. Our results contribute to the enhanced understanding of the spatial and temporal dynamics of phytoplankton communities in reservoirs in South China and provides insights into the management and conservation of these drinking water reservoirs.

Carbon-ion irradiation is a technique for trait improvement in the microalgae, but the underlying mechanisms that how it altered the biomass, and photosynthetic pigments accumulation were unclear. One mutant (DS240G-1) was obtained from Dunaliella salina by heavy ion irradiation mutagenesis. Compared to the wild type, the biomass accumulation and maximum growth rate of DS240G-1 were increased by 34% and 55% respectively, and its β-carotene content was 21% higher than the wild type. Subsequent analysis of the chlorophyll fluorescence parameters indicated that higher β-carotene productivity was likely owing to the improved maximum quantum efficiency (Fv/Fm) and decreased thermal dissipation of photosynthesis in DS240G-1 than that of wild type during cultivation. In addition, the result of this study revealed that high content of ROS may induce β-carotene accumulation in mutant DS240G-1. Also, the total fatty acid (TFA) content in mutant DS240G-1 was 79% higher than that in wild type. Owing to its high β-carotene productivity and total fatty acid content, DS240G-1 could be considered as a promising candidate for microalgae β-carotene and biodiesel production. This work provided the first insight into the biological effects involved in carbon-ions irradiation on the photosynthetic activity of D. salina. Keywords: microalgae, D. salina, carbon-ions irradiation, chlorophyll fluorescence, β-carotene DOI: 10.25165/j.ijabe.20211402.5993 Citation: Xi Y M, Liu Y, Chi Z Y, Yin L, Wang L J, Luo G H. Photosynthetic profiling of a Dunaliella salina mutant DS240G-1 with improved β-carotene productivity induced by heavy ions irradiation. Int J Agric & Biol Eng, 2021; 14(2): 211–217.

Environmental DNA (eDNA) has become a promising tool for phytoplankton surveys. However, the accuracy of eDNA-based detection is related to primer selection across diverse environments, and optimal primer pairs selection on phytoplankton community in human impacted ecosystems is still lacking. The aim of this study is to evaluate how primer selection shapes phytoplankton community profiles by eDNA biomonitoring diverse anthropogenically disturbed aquatic systems (rivers, reservoirs, and seas). Four primer pairs targeting the 18S rRNA (V9-1 and V9-2), chloroplast rbcL, and ITS regions, were explored and our results revealed that primer choice critically governed the accuracy of phytoplankton profiling. Significant variations in annotated phytoplankton eDNA sequences in different groups of primer pairs were observed, where the primers 18SV9-1 and rbcL demonstrated superior specificity, amplifying >90% of phytoplankton OTUs. 18S-targeted primers detected the highest species richness, while the ITS primer showed the lowest. Alpha diversity was highest and most consistent for 18S primers. Beta diversity ordination (nMDS/Bray–Curtis) further highlighted primer-dependent community structuring in which 18S primers effectively clustered reservoir and marine samples separately, whereas primer rbcL discriminated habitat-specific signatures across three ecosystems. The primer ITS failed to distinguish among different habitats. Overall, our data demonstrated the critical role of primer optimization in eDNA-based phytoplankton studies, and could provide methodological guidelines for the design of effective monitoring protocols in rapidly urbanizing aquatic systems.