Dongin Kim

Dongin Kim


Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
16 February 2015 in Nature Medicine
Verified
Journal Article
Open access
PDF file
YYYun-Hee Youm
Yun-Hee Youm
KNKim Y Nguyen
Kim Y Nguyen
RGRyan Grant
Ryan Grant
EGEmily L Goldberg
Emily L Goldberg
MBMonica Bodogai
Monica Bodogai
VDVishwa Deep Dixit
Vishwa Deep Dixit
Ketone bodies are elevated in response to fasting, a low-carbohydrate ketogenic diet or high-intensity exercise. Vishwa Deep Dixit and colleagues report that one metabolite, β-hydroxybutyrate, inhibits the NLRP3 inflammasome. In vivo, β-hydroxybutyrate is anti-inflammatory and suppresses NLRP3-mediated inflammatory disease. The ketone bodies β-hydroxybutyrate (BHB) and acetoacetate (AcAc) support mammalian survival during states of energy deficit by serving as alternative sources of ATP1. BHB levels are elevated by starvation, caloric restriction, high-intensity exercise, or the low-carbohydrate ketogenic diet2. Prolonged fasting reduces inflammation; however, the impact that ketones and other alternative metabolic fuels produced during energy deficits have on the innate immune response is unknown2,3,4,5,6. We report that BHB, but neither AcAc nor the structurally related short-chain fatty acids butyrate and acetate, suppresses activation of the NLRP3 inflammasome in response to urate crystals, ATP and lipotoxic fatty acids. BHB did not inhibit caspase-1 activation in response to pathogens that activate the NLR family, CARD domain containing 4 (NLRC4) or absent in melanoma 2 (AIM2) inflammasome and did not affect non-canonical caspase-11, inflammasome activation. Mechanistically, BHB inhibits the NLRP3 inflammasome by preventing K+ efflux and reducing ASC oligomerization and speck formation. The inhibitory effects of BHB on NLRP3 are not dependent on chirality or starvation-regulated mechanisms like AMP-activated protein kinase (AMPK), reactive oxygen species (ROS), autophagy or glycolytic inhibition. BHB blocks the NLRP3 inflammasome without undergoing oxidation in the TCA cycle, and independently of uncoupling protein-2 (UCP2), sirtuin-2 (SIRT2), the G protein–coupled receptor GPR109A or hydrocaboxylic acid receptor 2 (HCAR2). BHB reduces NLRP3 inflammasome–mediated interleukin (IL)-1β and IL-18 production in human monocytes. In vivo, BHB or a ketogenic diet attenuates caspase-1 activation and IL-1β secretion in mouse models of NLRP3-mediated diseases such as Muckle–Wells syndrome, familial cold autoinflammatory syndrome and urate crystal–induced peritonitis. Our findings suggest that the anti-inflammatory effects of caloric restriction or ketogenic diets may be linked to BHB-mediated inhibition of the NLRP3 inflammasome.

1 October 2007 in Journal of Controlled Release
Verified
Journal Article
Closed access
ELEun Seong Lee
Eun Seong Lee
KOKyung Taek Oh
Kyung Taek Oh
DKDongin Kim
Dongin Kim
YYYu Seok Youn
Yu Seok Youn
YBYou Han Bae
You Han Bae

1 August 2008 in Journal of Controlled Release
Verified
Journal Article
Closed access
ELEun Seong Lee
Eun Seong Lee
ZGZhonggao Gao
Zhonggao Gao
DKDongin Kim
Dongin Kim
Kyeongsoon ParkKyeongsoon Park
Kyeongsoon Park
IKIck Chan Kwon
Ick Chan Kwon
YBYou Han Bae
You Han Bae

3 November 2008 in Small
Verified
Journal Article
Closed access
PDF file
DKDongin Kim
Dongin Kim
ELEun Seong Lee
Eun Seong Lee
KOKyung Taek Oh
Kyung Taek Oh
ZGZhong Gao Gao
Zhong Gao Gao
YBYou Han Bae
You Han Bae

17 July 2011 in Nature Materials
Verified
Journal Article
Open access
PDF file
XNXinghai Ning
Xinghai Ning
SLSeungjun Lee
Seungjun Lee
ZWZhirui Wang
Zhirui Wang
DKDongin Kim
Dongin Kim
BSBryan Stubblefield
Bryan Stubblefield
NMNiren Murthy
Niren Murthy
The in vivo optical detection of bacterial infections requires highly specific imaging probes with small affinity to mammalian tissue. It is now shown that fluorescent dyes that are conjugated to maltohexaose can be internalized rapidly via the bacteria-specific maltodextrin transport pathway, enabling the in vivo imaging of Escherichia coli down to 105 colony-forming units. The diagnosis of bacterial infections remains a major challenge in medicine. Although numerous contrast agents have been developed to image bacteria, their clinical impact has been minimal because they are unable to detect small numbers of bacteria in vivo, and cannot distinguish infections from other pathologies such as cancer and inflammation1,2,3,4,5,6,7. Here, we present a family of contrast agents, termed maltodextrin-based imaging probes (MDPs), which can detect bacteria in vivo with a sensitivity two orders of magnitude higher than previously reported, and can detect bacteria using a bacteria-specific mechanism that is independent of host response and secondary pathologies. MDPs are composed of a fluorescent dye conjugated to maltohexaose, and are rapidly internalized through the bacteria-specific maltodextrin transport pathway8,9,10,11, endowing the MDPs with a unique combination of high sensitivity and specificity for bacteria. Here, we show that MDPs selectively accumulate within bacteria at millimolar concentrations, and are a thousand-fold more specific for bacteria than mammalian cells. Furthermore, we demonstrate that MDPs can image as few as 105 colony-forming units in vivo and can discriminate between active bacteria and inflammation induced by either lipopolysaccharides or metabolically inactive bacteria.

3 August 2014 in Nature Nanotechnology
Verified
Journal Article
Closed access
TFTarek R. Fadel
Tarek R. Fadel
FSFiona A. Sharp
Fiona A. Sharp
NVNalini Vudattu
Nalini Vudattu
RRRagy Ragheb
Ragy Ragheb
JGJustin Garyu
Justin Garyu
TFTarek M. Fahmy
Tarek M. Fahmy