Shiro Komba

Shiro Komba

orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 August 2018 in Marine Drugs
Verified
Journal Article
Open access
PDF file
SKShiro Komba
Shiro Komba
EKEiichi Kotake-Nara
Eiichi Kotake-Nara
WTWakako Tsuzuki
Wakako Tsuzuki
Fucoxanthin has an antiproliferative effect on cancer cells, but its detailed structure–activity correlation has not yet been elucidated. To elucidate this correlation, fucoxanthin was degraded by ozonolysis. The degraded compounds of fucoxanthin obtained by ozonolysis were purified by HPLC and analyzed by NMR. The polyene chain of fucoxanthin was cleaved by ozonolysis, and the fucoxanthin was divided into two types of cyclohexyl derivatives, one with a β,γ-epoxy ketone group and the other with an allenic bond. In order to elucidate the structure–activity correlation, Caco-2 cells (human colorectal carcinoma) were treated with fucoxanthin degradation compounds. It was found that the entire structure of fucoxanthin is not essential for its antiproliferative effect and that even a partial structure exerts this effect.

29 March 2021 in Nutrients
Verified
Journal Article
Open access
PDF file
EKEiichi Kotake-Nara
Eiichi Kotake-Nara
SKShiro Komba
Shiro Komba
MHMegumi Hase
Megumi Hase
Vitamins D have various biological activities, as well as intestinal calcium absorption. There has been recent concern about insufficient vitamin D intake. In addition to vitamins D2 and D3, there are lesser-known vitamins D4–D7. We synthesized vitamins D5–D7, which are not commercially available, and then evaluated and compared the mixed micelles-solubilized vitamins D uptake by Caco-2 cells. Except for vitamin D5, the uptake amounts of vitamins D4–D7 by differentiated Caco-2 cells were similar to those of vitamins D2 and D3. The facilitative diffusion rate in the ezetimibe inhibited pathway was approximately 20% for each vitamin D type, suggesting that they would pass through the pathway at a similar rate. Lysophosphatidylcholine enhanced each vitamin D uptake by approximately 2.5-fold. Lysophosphatidylcholine showed an enhancing effect on vitamin D uptake by reducing the intercellular barrier formation of Caco-2 cells by reducing cellular cholesterol, suggesting that increasing the uptakes of vitamins D and/or co-ingesting them with lysophosphatidylcholine, would improve vitamin D insufficiency. The various biological activities in the activated form of vitamins D4–D7 were estimated by Prediction of Activity Spectra for Substances (PASS) online simulation. These may have some biological activities, supporting the potential as nutritional components.

1 May 2018 in Journal of Cereal Science
Verified
Journal Article
Closed access
WTWakako Tsuzuki
Wakako Tsuzuki
SKShiro Komba
Shiro Komba
EKEiichi Kotake-Nara
Eiichi Kotake-Nara
MAMasato Aoyagi
Masato Aoyagi
HMHiroyuki Mogushi
Hiroyuki Mogushi
AHAkira Horigane
Akira Horigane

19 June 2024 in Journal of the American Chemical Society
Verified
Journal Article
Open access
SMSei Motouchi
Sei Motouchi
SKShiro Komba
Shiro Komba
HNHiroyuki Nakai
Hiroyuki Nakai
MNMasahiro Nakajima
Masahiro Nakajima
Various Xanthomonas species cause well-known plant diseases. Among various pathogenic factors, the role of α-1,6-cyclized β-1,2-glucohexadecaose (CβG16α) produced by Xanthomonas campestris pv. campestris was previously shown to be vital for infecting model organisms, Arabidopsis thaliana and Nicotiana benthamiana. However, enzymes responsible for biosynthesizing CβG16α are essentially unknown, which limits the generation of agrichemicals that inhibit CβG16α synthesis. In this study, we discovered that OpgD from X. campestris pv. campestris converts linear β-1,2-glucan to CβG16α. Structural and functional analyses revealed OpgD from X. campestris pv. campestris possesses an anomer-inverting transglycosylation mechanism, which is unprecedented among glycoside hydrolase family enzymes.

19 March 2007 in Tetrahedron Letters
Verified
Journal Article
Closed access
SKShiro Komba
Shiro Komba
SSSayoko Sasaki
Sayoko Sasaki
SMSachiko Machida
Sachiko Machida

31 May 2022 in ACS Sustainable Chemistry & Engineering
Verified
Journal Article
Closed access
RIRika Iwaura
Rika Iwaura
SKShiro Komba
Shiro Komba