Ying Li

Dr. Ying Li

Department of Mechanical Engineering, University of Connecticut, Storrs, CT 06269, USA
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Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 July 2015 in Nanoscale
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Journal Article
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Ying LiYing Li
Ying Li
Martin KrögerMartin Kröger
Martin Kröger
WLWing Kam Liu
Wing Kam Liu
The size, shape, surface property and material composition of polymer-coated nanoparticles (NPs) are four important parameters in designing efficient NP-based carriers for targeted drug delivery. However, due to the complex interplay between size, shape and surface property, most studies lead to ambiguous descriptions of the relevance of shape. To clarify its influence on the cellular uptake of PEGylated NPs, large scale molecular simulations have been performed to study differently shaped convex NPs, such as sphere, rod, cube and disk. Comparing systems with identical NP surface area, ligand–receptor interaction strength, and grafting density of the polyethylene glycol, we find that the spherical NPs exhibit the fastest internalization rate, followed by the cubic NPs, then rod- and disk-like NPs. The spherical NPs thus demonstrate the highest uptake among these differently shaped NPs. Based on a detailed free energy analysis, the NP shape effect is found to be mainly induced by the different membrane bending energies during endocytosis. The spherical NPs need to overcome a minimal membrane bending energy barrier, compared with the non-spherical counterparts, while the internalization of disk-like NPs involves a strong membrane deformation, responsible for a large free energy barrier. Besides, the free energy change per tethered chain is about a single kBT regardless of NP shape, as revealed by our self-consistent field theory calculations, where kB and T denote Boltzmann constant and temperature, respectively. Thus, the NP shape only plays the secondary role in the free energy change of grafted PEG polymers during internalization. We also find that star-shaped NPs can be quickly wrapped by the cell membrane, similar to their spherical counterparts, indicating star-shaped NPs can be used for drug delivery with high efficacy. Our findings seem to provide useful guidance in the molecular design of PEGylated NPs for controllable cellular uptake and help establish quantitatively rules in designing NP-based vectors for targeted drug delivery.

18 October 2021 in Journal of Chemical Information and Modeling
Verified
Journal Article
Closed access
LTLei Tao
Lei Tao
VVVikas Varshney
Vikas Varshney
Ying LiYing Li
Ying Li

22 July 2022 in Science Advances
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Journal Article
Open access
JYJason Yang
Jason Yang
LTLei Tao
Lei Tao
JHJinlong He
Jinlong He
MJMcCutcheon Jeffrey
McCutcheon Jeffrey
Ying LiYing Li
Ying Li
Polymer membranes perform innumerable separations with far-reaching environmental implications. Despite decades of research, design of new membrane materials remains a largely Edisonian process. To address this shortcoming, we demonstrate a generalizable, accurate machine learning (ML) implementation for the discovery of innovative polymers with ideal performance. Specifically, multitask ML models are trained on experimental data to link polymer chemistry to gas permeabilities of He, H 2 , O 2 , N 2 , CO 2 , and CH 4 . We interpret the ML models and extract valuable insights into the contributions of different chemical moieties to permeability and selectivity. We then screen over 9 million hypothetical polymers and identify thousands that lie well above current performance upper bounds, including hundreds of never-before-seen ultrapermeable polymer membranes with O 2 and CO 2 permeability greater than 10 4 and 10 5 Barrers, respectively. High-fidelity molecular dynamics simulations confirm the ML-predicted gas permeabilities of the promising candidates, which suggests that many can be translated to reality.

13 June 2013 in Polymers
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Ying LiYing Li
Ying Li
BABrendan C. Abberton
Brendan C. Abberton
Martin KrögerMartin Kröger
Martin Kröger
WLWing Kam Liu
Wing Kam Liu
The mechanical and physical properties of polymeric materials originate from the interplay of phenomena at different spatial and temporal scales. As such, it is necessary to adopt multiscale techniques when modeling polymeric materials in order to account for all important mechanisms. Over the past two decades, a number of different multiscale computational techniques have been developed that can be divided into three categories: (i) coarse-graining methods for generic polymers; (ii) systematic coarse-graining methods and (iii) multiple-scale-bridging methods. In this work, we discuss and compare eleven different multiscale computational techniques falling under these categories and assess them critically according to their ability to provide a rigorous link between polymer chemistry and rheological material properties. For each technique, the fundamental ideas and equations are introduced, and the most important results or predictions are shown and discussed. On the one hand, this review provides a comprehensive tutorial on multiscale computational techniques, which will be of interest to readers newly entering this field; on the other, it presents a critical discussion of the future opportunities and key challenges in the multiscale modeling of polymeric materials and how these methods can help us to optimize and design new polymeric materials.

1 October 2014 in Biomaterials
Verified
Journal Article
Open access
Ying LiYing Li
Ying Li
Martin KrögerMartin Kröger
Martin Kröger
WLWing Kam Liu
Wing Kam Liu
Nanoparticles (NPs) are in use to efficiently deliver drug molecules into diseased cells. The surfaces of NPs are usually grafted with polyethylene glycol (PEG) polymers, during so-called PEGylation, to improve water solubility, avoid aggregation, and prevent opsonization during blood circulation. The interplay between grafting density σp and grafted PEG polymerization degree N makes cellular uptake of PEGylated NPs distinct from that of bare NPs. To understand the role played by grafted PEG polymers, we study the endocytosis of 8 nm sized PEGylated NPs with different σp and N through large scale dissipative particle dynamics (DPD) simulations. The free energy change Fpolymer of grafted PEG polymers, before and after endocytosis, is identified to have an effect which is comparable to, or even larger than, the bending energy of the membrane during endocytosis. Based on self-consistent field theory Fpolymer is found to be dependent on both σp and N. By incorporating Fpolymer, the critical ligand-receptor binding strength for PEGylated NPs to be internalized can be correctly predicted by a simple analytical equation. Without considering Fpolymer, it turns out impossible to predict whether the PEGylated NPs will be delivered into the diseased cells. These simulation results and theoretical analysis not only provide new insights into the endocytosis process of PEGylated NPs, but also shed light on the underlying physical mechanisms, which can be utilized for designing efficient PEGylated NP-based therapeutic carriers with improved cellular targeting and uptake.