Joshua Kenneth Thackray

Mr. Joshua Kenneth Thackray

orcid

Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 May 2016 in The EMBO Journal
Verified
Journal Article
Open access
PDF file
BPBerta Nieves Nieves Vazquez Prat
Berta Nieves Nieves Vazquez Prat
JTJoshua K Thackray
Joshua K Thackray
NSNicolas G Simonet
Nicolas G Simonet
NKNoriko Kane‐Goldsmith
Noriko Kane‐Goldsmith
PMPaloma Martinez‐Redondo
Paloma Martinez‐Redondo
LSLourdes Serrano
Lourdes Serrano
Sirtuins, a family of protein deacetylases, promote cellular homeostasis by mediating communication between cells and environment. The enzymatic activity of the mammalian sirtuin SIRT7 targets acetylated lysine in the N‐terminal tail of histone H3 (H3K18Ac), thus modulating chromatin structure and transcriptional competency. SIRT7 deletion is associated with reduced lifespan in mice through unknown mechanisms. Here, we show that SirT7‐knockout mice suffer from partial embryonic lethality and a progeroid‐like phenotype. Consistently, SIRT7‐deficient cells display increased replication stress and impaired DNA repair. SIRT7 is recruited in a PARP1‐dependent manner to sites of DNA damage, where it modulates H3K18Ac levels. H3K18Ac in turn affects recruitment of the damage response factor 53BP1 to DNA double‐strand breaks (DSBs), thereby influencing the efficiency of non‐homologous end joining (NHEJ). These results reveal a direct role for SIRT7 in DSB repair and establish a functional link between SIRT7‐mediated H3K18 deacetylation and the maintenance of genome integrity.

1 September 2018 in Cell Reports
Verified
Journal Article
Open access
SWSheng Wang
Sheng Wang
JMJeffrey D. Mandell
Jeffrey D. Mandell
YKYogesh Kumar
Yogesh Kumar
NSNawei Sun
Nawei Sun
MMMontana T. Morris
Montana T. Morris
AWA. Jeremy Willsey
A. Jeremy Willsey
We previously established the contribution of de novo damaging sequence variants to Tourette disorder (TD) through whole-exome sequencing of 511 trios. Here, we sequence an additional 291 TD trios and analyze the combined set of 802 trios. We observe an overrepresentation of de novo damaging variants in simplex, but not multiplex, families; we identify a high-confidence TD risk gene, CELSR3 (cadherin EGF LAG seven-pass G-type receptor 3); we find that the genes mutated in TD patients are enriched for those related to cell polarity, suggesting a common pathway underlying pathobiology; and we confirm a statistically significant excess of de novo copy number variants in TD. Finally, we identify significant overlap of de novo sequence variants between TD and obsessive-compulsive disorder and de novo copy number variants between TD and autism spectrum disorder, consistent with shared genetic risk.

17 February 2017 in Nucleus
Verified
Journal Article
Open access
BPBerta Nieves Nieves Vazquez Prat
Berta Nieves Nieves Vazquez Prat
JTJoshua K. Thackray
Joshua K. Thackray
LSLourdes Serrano
Lourdes Serrano
Aging is characterized by a cumulative loss of genome integrity, which involves chromatin reorganization, transcriptional dysregulation and the accumulation of DNA damage. Sirtuins participate in the protection against these aging processes by promoting genome homeostasis in response to cellular stress. We recently reported that SirT7-/- mice suffer from partial embryonic lethality and a progeroid like phenotype. At the cellular level, SIRT7 depletion results in the impaired repair of DNA double-strand breaks (DSBs), one the most dangerous DNA lesions, leading to genome instability. SIRT7 is recruited to DSBs, where it specifically deacetylates histone H3 at lysine 18 and affects the focal accumulation of the DNA damage response factor 53BP1, thus influencing the efficiency of repair. Here, we integrate our findings with the current knowledge on the mode of action of other sirtuin family members in DNA repair. We emphasize their capacity to regulate chromatin structure as a response to DNA damage within the constraints imposed by cellular status.

1 November 2017 in Cell Reports
Verified
Journal Article
Open access
LBLaia Bosch-Presegué
Laia Bosch-Presegué
HRHelena Raurell-Vila
Helena Raurell-Vila
JTJoshua K. Thackray
Joshua K. Thackray
JGJessica González
Jessica González
CCCarmen Casal
Carmen Casal
Alejandro VaqueroAlejandro Vaquero
Alejandro Vaquero
HP1 is a structural component of heterochromatin. Mammalian HP1 isoforms HP1α, HP1β, and HP1γ play different roles in genome stability, but their precise role in heterochromatin structure is unclear. Analysis of Hp1α-/-, Hp1β-/-, and Hp1γ-/- MEFs show that HP1 proteins have both redundant and unique functions within pericentric heterochromatin (PCH) and also act globally throughout the genome. HP1α confines H4K20me3 and H3K27me3 to regions within PCH, while its absence results in a global hyper-compaction of chromatin associated with a specific pattern of mitotic defects. In contrast, HP1β is functionally associated with Suv4-20h2 and H4K20me3, and its loss induces global chromatin decompaction and an abnormal enrichment of CTCF in PCH and other genomic regions. Our work provides insight into the roles of HP1 proteins in heterochromatin structure and genome stability.

21 June 2019 in Nucleic Acids Research
Verified
Journal Article
Open access
PDF file
BPBerta Nieves Nieves Vazquez Prat
Berta Nieves Nieves Vazquez Prat
JTJoshua K Thackray
Joshua K Thackray
NSNicolas G Simonet
Nicolas G Simonet
SCSanjay Chahar
Sanjay Chahar
NKNoriko Kane-Goldsmith
Noriko Kane-Goldsmith
LSLourdes Serrano
Lourdes Serrano
Long interspersed elements-1 (LINE-1, L1) are retrotransposons that hold the capacity of self-propagation in the genome with potential mutagenic outcomes. How somatic cells restrict L1 activity and how this process becomes dysfunctional during aging and in cancer cells is poorly understood. L1s are enriched at lamin-associated domains, heterochromatic regions of the nuclear periphery. Whether this association is necessary for their repression has been elusive. Here we show that the sirtuin family member SIRT7 participates in the epigenetic transcriptional repression of L1 genome-wide in both mouse and human cells. SIRT7 depletion leads to increased L1 expression and retrotransposition. Mechanistically, we identify a novel interplay between SIRT7 and Lamin A/C in L1 repression. Our results demonstrate that SIRT7-mediated H3K18 deacetylation regulates L1 expression and promotes L1 association with elements of the nuclear lamina. The failure of such activity might contribute to the observed genome instability and compromised viability in SIRT7 knockout mice. Overall, our results reveal a novel function of SIRT7 on chromatin organization by mediating the anchoring of L1 to the nuclear envelope, and a new functional link of the nuclear lamina with transcriptional repression.

1 December 2017 in Cell Reports
Verified
Journal Article
Open access
KTKevin Tong
Kevin Tong
OPOscar Pellón-Cárdenas
Oscar Pellón-Cárdenas
VSVeerin R. Sirihorachai
Veerin R. Sirihorachai
BWBailey N. Warder
Bailey N. Warder
OKOm A. Kothari
Om A. Kothari
MVMichael P. Verzi
Michael P. Verzi
Oncogenic mutations in BRAF are believed to initiate serrated colorectal cancers, however the mechanisms of BRAF-driven colon cancer are unclear. We find that oncogenic BRAF paradoxically suppresses stem cell renewal and instead promotes differentiation. Correspondingly, tumor formation is inefficient in BRAF-driven mouse models of colon cancer. By reducing levels of differentiation via genetic manipulation of either of two distinct differentiation-promoting factors (Smad4 or Cdx2), stem cell activity is restored in BRAFV600E intestines, and the oncogenic capacity of BRAFV600E is amplified. In human patients, we observe that reduced levels of differentiation in normal tissue is associated with increased susceptibility to serrated colon tumors. Together, these findings help resolve the conditions necessary for BRAF-driven colon cancer initiation. Additionally, our results predict that genetic and/or environmental factors which reduce tissue differentiation will increase susceptibility to serrated colon cancer. These findings offer an opportunity to identify susceptible individuals by assessing their tissue-differentiation status.